View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6865A_low_36 (Length: 393)
Name: NF6865A_low_36
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 8700014 - 8699769
Alignment:
| Q |
1 |
tattctagaactattatggattaactttgtaagcggttcaggcagcacctgaaattttattgcagtttttacttgatnnnnnnnnn-gttttaaataagt |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||| | |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8700014 |
tattctagaactattatggattaagtttgtaagcggttcaagcagctcttgaaattttattgcagtttttacttgataaaaaaaaaagttttaaataagt |
8699915 |
T |
|
| Q |
100 |
attttctattctatcctagaatacttaatgagatggtgaggaatctcctacaagtcttgatttcaaatctagaagagttttgtgattcattgtgatgcct |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8699914 |
attttctattctatcctagaatacttaatgagatggtgaggaatctcctagaggtcttgatttcaaatctagaagagttttgtaattcattgtgatgcct |
8699815 |
T |
|
| Q |
200 |
tacccgacttaaggaattagtctatacactttgcacaaagataccc |
245 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
8699814 |
tacccgatttaaggaattagtttatacactttgcacagagataccc |
8699769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 14382892 - 14382932
Alignment:
| Q |
96 |
aagtattttctattctatcctagaatacttaatgagatggt |
136 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
14382892 |
aagtattttctattctatcctaaaatacttaaagagatggt |
14382932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 52773603 - 52773527
Alignment:
| Q |
1 |
tattctagaactattatggattaactttgtaagcggttcaggcagcacctgaaattttattgcagtttttacttgat |
77 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
52773603 |
tattctagaactattacggactaactttgtaagcggttgaggcagctcctgaaattttattgcagtttttacttgat |
52773527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University