View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_39 (Length: 389)
Name: NF6865A_low_39
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 39 - 380
Target Start/End: Complemental strand, 33492916 - 33492590
Alignment:
| Q |
39 |
gaagaattgctagcttatcttcagggcgatctcaacatcggggctgaacaaattaaccatatcctcctcgacaaaggaacaaatgggtccagccatgata |
138 |
Q |
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| T |
33492916 |
gaagaattgctagcttatcttcagtgcgatctcaacatcggggctgaacaaattaaccatatcctc---ggcaaaggaacaaatgggtccagccatgata |
33492820 |
T |
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| Q |
139 |
cggatgacgacaatgtggtacttgaatgtggaaagggattgagactgtttggggtttg-cttcaaaggaaaagaaaatatccttataaactaggactggc |
237 |
Q |
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| T |
33492819 |
cggatgatgacaatgtgg-------------aaagggattgagactgtttggggtttggcttcaagggaaaagaaaatatctttataaactaggattggc |
33492733 |
T |
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| Q |
238 |
aacagtacaatgagctgtaatagataaggcctaagagctgtcaatacctgttttcaactattgaaattatccatccatttgggctttccttctcactctc |
337 |
Q |
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| T |
33492732 |
aacagtacaatgagctgtaatagataaggcctaagagctgtcaacacctgttttcaactattgaaattatccatccatttgggctttccttctcactctc |
33492633 |
T |
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| Q |
338 |
ttttcatcggtctgattgggctttttgttgttatgatgtccat |
380 |
Q |
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| T |
33492632 |
ttttcatcggtctgattgggccttttgttgttattatgtccat |
33492590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 25 - 288
Target Start/End: Original strand, 33493328 - 33493594
Alignment:
| Q |
25 |
cgaagaagaagtgcgaagaattgctagcttatcttcagggcgatctcaacatcggggctgaacaaattaaccatatcctcctcgacaaaggaacaaatgg |
124 |
Q |
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| T |
33493328 |
cgaagaagaagtgcgaagaattgctaccttatctttagggcaatctcaacatcggggctgaacaaattaaccatatcctc---ggcaaaagaacaaatgg |
33493424 |
T |
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| Q |
125 |
gtccagccatgatacggatgacga------caatgtggtacttgaatgtggaaagggattgagactgtttggggtttgcttcaaaggaaaagaaaatatc |
218 |
Q |
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| T |
33493425 |
gtccagccatgatacggatgatgatgatgacaatgtggtacgtgaatgtggaaagggattgagactgtttggggtttggctgaagggagaagaaaatatc |
33493524 |
T |
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| Q |
219 |
cttataaactaggactggcaacagtacaatgagctgtaatagataaggcctaagagctgtcaatacctgt |
288 |
Q |
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| T |
33493525 |
cctataaactaggactagaaacagtacaacaagcagtaatagataaggcctaagagatgtcaacacctgt |
33493594 |
T |
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