View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6865A_low_43 (Length: 380)
Name: NF6865A_low_43
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 10 - 369
Target Start/End: Original strand, 51960933 - 51961296
Alignment:
| Q |
10 |
actacactgttgcatgtcaccagaaattgacacttaaacaagaagttgaaggtttttgctcaaagtgaagaatcttcttcggtgtatatgacgaaattat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51960933 |
actacactgttgcatgtcaccagaaattgacacttaaacaagaagttgaaggtttttgctcaaagtgaagaatcttcttcggtgtatatgacgaaattat |
51961032 |
T |
|
| Q |
110 |
gtgtctaatagatttagactttgagacaaaagagtagaatctgcttccgtgatctaggagaggatggaaagctacacctttaatttaagcagagtctttc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
51961033 |
gtgtctaatagatttagactttgagacaaaagagtagaatctgcttccgtgatctaggagaggatggaaagctacacctttaatttaaccagagtctttc |
51961132 |
T |
|
| Q |
210 |
ttattgacagaaca----acagcgatccttttgtaatgatgtaaatttattactttctcaaggatttggattttgttatttacaactcgagcatagtact |
305 |
Q |
| |
|
||||||| ||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
51961133 |
ttattgatagagcaacgtacatcgatccttttgtaatgatgtaaatttattactttctcaaggatttggattttcttatttacaactcgagcatagtact |
51961232 |
T |
|
| Q |
306 |
agagtgatagagtcacaacattcaaacgtgtgatataacatcattgaacaaccatgcaatattg |
369 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
51961233 |
atagtgatagagtcacaacattcaaacatgtgatataacatcattgaacaaccatgcaatattg |
51961296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University