View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_50 (Length: 365)
Name: NF6865A_low_50
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 339
Target Start/End: Complemental strand, 12122486 - 12122166
Alignment:
| Q |
19 |
ctctattctgacccacgcatcccctccaacattctcaaactcttcccttcttctcatggcagtgaaaccatcgacgcctccgacggttctggtctacacc |
118 |
Q |
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| T |
12122486 |
ctctattccgatccacgcatcccctccaacattctcaaattcttcccttcttttcatggcagtgaaaccattgacgcctccgacggttctggtctacacc |
12122387 |
T |
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| Q |
119 |
cccaccttatcttagaagatattgtctccaattacaccaacgccgctgtcgtcgacatcaagattggttctcgaacatggcaccctcaatcctccgaaga |
218 |
Q |
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| T |
12122386 |
cccaccttatcttagaagatattgtctccaattacaccaacgccgctgtcgtcgacatcaagattggttctcgaacatggcaacctcaatcctccgaaga |
12122287 |
T |
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| Q |
219 |
ttacattcggaaatgcctccagaaagatcgagaatcttctacgataaaattagggtttagaatctctgggttgaggtctgtgggtcccagtaacaaatta |
318 |
Q |
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| T |
12122286 |
ttatattcggaaatgcctccagaaagatcgagaatcttctacgataaaattagggtttagaatctctgggttgaggtctgtgggtcccagtaacaaatta |
12122187 |
T |
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| Q |
319 |
tggcagcctcatagaaagctt |
339 |
Q |
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| T |
12122186 |
tggcagcctcatagaaagctt |
12122166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 14692013 - 14691688
Alignment:
| Q |
11 |
acacatctctctattctgacccacgcatcccctccaacattctcaaactcttcccttcttctcatggcagtgaaaccatcgacgcctccgacggttctgg |
110 |
Q |
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| T |
14692013 |
acacatccctctattccgatccacgcattcccaccaacattctcaaattcttcccttcttttcacggcactcaaaccgtcgatgcctccgacggatctgg |
14691914 |
T |
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| Q |
111 |
tctacacccccaccttatcttagaagatattgtctccaattacaccaacgccgctgtcgtcgacatcaagattggttctcgaacatggcaccctcaatcc |
210 |
Q |
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||||||||||||||| |||||||||| |||||| ||||||||||||| | || ||||||||||||||||| ||||| |||||||||||||| || ||| |
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| T |
14691913 |
tctacacccccacctcgtcttagaagacattgtcagcaattacaccaaccctgccgtcgtcgacatcaagatcggttcacgaacatggcacccacagtcc |
14691814 |
T |
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| Q |
211 |
tccgaagattacattcggaaatgcctccagaaagatcgagaatcttctacgataaaattagggtttagaatctctgggttgaggtctgtgggtcccagta |
310 |
Q |
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| T |
14691813 |
tctgaagattacatccggaaatgcctccagaaagatcgagaatcttctagtatcaaattagggtttagaatctccggtttgaggtcagtgggtcccacta |
14691714 |
T |
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| Q |
311 |
acaaattatggcagcctcatagaaag |
336 |
Q |
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| T |
14691713 |
atcaattatggcagcctcataaaaag |
14691688 |
T |
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