View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_57 (Length: 357)
Name: NF6865A_low_57
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_57 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 6 - 347
Target Start/End: Complemental strand, 34959277 - 34958932
Alignment:
| Q |
6 |
acaagagtgaaatgcaaatgaatcatatctttaaaataaaatgcatgcatcatatgccaaaaaggtcaagttttccagattttgaaaagcatttttggaa |
105 |
Q |
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| T |
34959277 |
acaagagtgaaatgcaaatgaatcatatctttaaaataaaatgcatgcatcatatgccaaaaaggtcaagttttccagattttgaaaagcattttttgaa |
34959178 |
T |
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| Q |
106 |
gccaatttctttgaactttgagagatgattaatatagtttcaatgtgcacatgaggctggatcttagacttgtttcaccgttacaacaaatatgtactat |
205 |
Q |
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| T |
34959177 |
gccaatttctaagaactttgagagatgattaatatagtttcaatgtgcacatgaggctggatcttagacttgtttcaccgttacaacaaatatgtactat |
34959078 |
T |
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| Q |
206 |
t----gttgatgaggcgcacttgttaatatggcatgaacttttt-tatacaatcctgaatcaatgactttaaccatatgaaatattggaatgtgagttgc |
300 |
Q |
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| T |
34959077 |
tgtacgttgatgaggcgcacttgttaatatgtcctgcactttttgtgtacaatcctgaatcaatgac-ttaaccatatgaaattttgaaatgtaagttgc |
34958979 |
T |
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| Q |
301 |
tttcggaatatggtgatactatgaaacacaaactcatacacgaacac |
347 |
Q |
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| T |
34958978 |
ttttggaatatggtaatactatgaaacacaaactcatacacgaacac |
34958932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 347
Target Start/End: Original strand, 3921320 - 3921652
Alignment:
| Q |
6 |
acaagagtgaaatgcaaatgaatcatatctttaaaataaaatgcatgcatcatatgccaaaaaggtcaagttttccagattttgaaaagcatttttggaa |
105 |
Q |
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| T |
3921320 |
acaagagtgaaatgcagatgaatcatatctttaaaataaaatgcatgcatcatatgccaaaaaggtcaagctttccagattttgaaaagcattttctgaa |
3921419 |
T |
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| Q |
106 |
gccaatttctttgaactttgagagatgattaatatagtttcaatgtgcacatgaggctggatcttagacttgtttcaccgttacaacaaatatgtactat |
205 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3921420 |
accaatttctttgaactgtgagagatgattaatataggttcaatgtgcacatgaggctggatcttagacttgtttcacagttacaacaaatatgtactat |
3921519 |
T |
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| Q |
206 |
tgttgatgaggcgcacttgttaatatggcatgaacttttt-tatacaatcctgaatcaatgactttaaccatatgaaatattggaatgtgagttgctttc |
304 |
Q |
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| T |
3921520 |
tgtt----------acttgttaatatgtcctacactttttgtgtacaatcctcaatcaatgactttaaccatatgaaatttccgaatgtgaattactttc |
3921609 |
T |
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| Q |
305 |
ggaatatggtgatactatgaaacacaaactcatacacgaacac |
347 |
Q |
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| T |
3921610 |
ggaatatggtgatactatgaaacacaaactcatacacgaacac |
3921652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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