View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_60 (Length: 353)

Name: NF6865A_low_60
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_60
NF6865A_low_60
[»] chr4 (10 HSPs)
chr4 (22-177)||(37179999-37180154)
chr4 (22-177)||(37181583-37181738)
chr4 (22-177)||(37189700-37189855)
chr4 (22-173)||(37187682-37187833)
chr4 (240-336)||(37180220-37180316)
chr4 (240-336)||(37189538-37189634)
chr4 (125-173)||(38704220-38704268)
chr4 (240-312)||(37181445-37181517)
chr4 (241-328)||(37187901-37187988)
chr4 (240-312)||(38704293-38704369)
[»] chr5 (2 HSPs)
chr5 (37-155)||(27096701-27096816)
chr5 (37-155)||(27103004-27103119)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 22 - 177
Target Start/End: Original strand, 37179999 - 37180154
Alignment:
Q  22 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37179999 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 37180098  T
Q  122 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180099 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 37180154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 37181738 - 37181583
Alignment:
Q  22 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181738 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 37181639  T
Q  122 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181638 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 37181583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 37189855 - 37189700
Alignment:
Q  22 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189855 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 37189756  T
Q  122 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189755 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaaggtaaa 37189700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 22 - 173
Target Start/End: Original strand, 37187682 - 37187833
Alignment:
Q  22 gaagtgactgctggcaatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaag 121  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||  || ||||||||||||||||||||||||||||||||||    
T  37187682 gaagtggctgctggcaatggtggaatgttgagagatggaattgttggaaaatttgtaggaaagctaggaagtggtggcatagtgagtttaggcatagaag 37187781  T
Q  122 ggatagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg 173  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37187782 ggatagtaggcaatggaggaagatttccctgaggcatatttggaattgaagg 37187833  T

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Target: chr4; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 240 - 336
Target Start/End: Original strand, 37180220 - 37180316
Alignment:
Q  240 caaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgatagtttgatg 336  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180220 caaaagatggcgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgatagtttgatg 37180316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 240 - 336
Target Start/End: Complemental strand, 37189634 - 37189538
Alignment:
Q  240 caaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgatagtttgatg 336  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37189634 caaaagatggcgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatcaaggatttgaatattgccattgatagtttgatg 37189538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 38704220 - 38704268
Alignment:
Q  125 tagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38704220 tagtaggcaatggaggaagatttccttgaggcatatttggaattgaagg 38704268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 37181517 - 37181445
Alignment:
Q  240 caaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttg 312  Q
    ||||||||| |||||||||||||||||| |||| ||||| ||||| |||||||||||||  ||||||||||||    
T  37181517 caaaagatggcgagcttctaggctcatgcttgacattgtgacaacaagaagtaaagttgcaatgaaggatttg 37181445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 328
Target Start/End: Original strand, 37187901 - 37187988
Alignment:
Q  241 aaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagtaaagttgtgatgaaggatttgaatattgccattgata 328  Q
    |||||||| |||||||||||||||||| |||| || |||||||| |||||||||| | ||||||||||||||  |  |||||||||||    
T  37187901 aaaagatggcgagcttctaggctcatgcttgacatggtcacaacaagaagtaaagctatgatgaaggatttgcttgatgccattgata 37187988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 38704293 - 38704369
Alignment:
Q  240 caaaagatgacgagcttctaggctcatgtttgatattgtcacaactagaagta----aagttgtgatgaaggatttg 312  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||| |||||||    |||||||||| |||||||||    
T  38704293 caaaagatgacgagcttctaggttcatgcttgacattgtcacaacaagaagtaaattaagttgtgattaaggatttg 38704369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 37 - 155
Target Start/End: Complemental strand, 27096816 - 27096701
Alignment:
Q  37 aatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtaggcaatg 136  Q
    |||||||||| |||||||||||||| |||||||   || |||||||  || |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27096816 aatggtggaaagttgagagatggaagtgttgga---ttggtaggaatgctaggaagtggtggcatagtgagcttaggcatagaagggatagtaggcaatg 27096720  T
Q  137 gaggaagatttccttgagg 155  Q
    |||||| ||| ||||||||    
T  27096719 gaggaacattaccttgagg 27096701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 155
Target Start/End: Complemental strand, 27103119 - 27103004
Alignment:
Q  37 aatggtggaatgttgagagatggaattgttggaatatttgtaggaagacttggaagtggtggcatagtgagtttaggcatagaagggatagtaggcaatg 136  Q
    |||||||||| |||||||||||||| |||||||   || || ||||  || |||||||||||||||||||| |||||||  |||||||| ||||||||||    
T  27103119 aatggtggaaagttgagagatggaagtgttgga---ttggttggaatgctaggaagtggtggcatagtgagcttaggcactgaagggatggtaggcaatg 27103023  T
Q  137 gaggaagatttccttgagg 155  Q
    |||||| ||| ||||||||    
T  27103022 gaggaacattaccttgagg 27103004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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