View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_61 (Length: 353)
Name: NF6865A_low_61
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 159 - 346
Target Start/End: Original strand, 45683998 - 45684186
Alignment:
| Q |
159 |
gattccataaatagtaaccnnnnnnnntgcaggtgcgaagactaaataggttcaaaagtgagagcaaaaatatcaaaa-gcacaaagcgatggatattta |
257 |
Q |
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| T |
45683998 |
gattccataaatagtaaccaaaaaaaatgcaggcgcgaagactaaataggttcaaaagtgagagcaaaaatatcaaaaagcacaaagcgatggatattta |
45684097 |
T |
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| Q |
258 |
tgtctgataaatattatagaatacattaaatcaaaggatgagttggtaaacaattttatcaagggattaccagtttcacagcaacacca |
346 |
Q |
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| T |
45684098 |
tgtctgataaatattatagaatacattagatcaaaggatgagttggtaaacaattttatcaagggattaccagtttcacagcaacacca |
45684186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 45683800 - 45683917
Alignment:
| Q |
21 |
agaactatctcagcagcacctttccaatgtatatgcacttcagagtccgcctgccaagaagattacaacaaatgtttctaattagcacatgaaagtcgat |
120 |
Q |
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| T |
45683800 |
agaactatctcagcagcacctttccaatgtatatgcacttcagagtccgcctgccaagaagattacaacaaacgtttctgattagcacatgaaagtcgat |
45683899 |
T |
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| Q |
121 |
ggaaacaacatcgaagtg |
138 |
Q |
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| T |
45683900 |
ggaaacaacatctaagtg |
45683917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 16691183 - 16691130
Alignment:
| Q |
21 |
agaactatctcagcagcacctttccaatgtatatgcacttcagagtccgcctgc |
74 |
Q |
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| T |
16691183 |
agaacaatttcagcagcacctttccaatgtatatgaacatcagagtcagcctgc |
16691130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 1443470 - 1443415
Alignment:
| Q |
21 |
agaactatctcagcagcacctttccaatgtatatgcacttcagagtccgcctgcca |
76 |
Q |
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| T |
1443470 |
agaactatttctgcagctcctttccagtgtatatgcactccagagtccacctgcca |
1443415 |
T |
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