View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_62 (Length: 353)
Name: NF6865A_low_62
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 51873635 - 51873981
Alignment:
| Q |
1 |
gggcccaaacctttcttcatgcataaaaacacacactcaccttcatcatcttcctcccatacaaaatacacaaacctcttacatcttctcaaacagcttc |
100 |
Q |
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| T |
51873635 |
gggcccaagcctttcttcatgcataaaaacacacactcaccttcatcatcttcctcccatacaaaatacacaaacctcttacatcttctcaaacagcttc |
51873734 |
T |
|
| Q |
101 |
aaacacaatccatccacgatcactaagcctaagctagaagcaagagcagtggtagctcttgtatattctatcctttgtacatatccaaaactacttgcta |
200 |
Q |
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| T |
51873735 |
aaacacagtccatccacgatcactaagcctaagctagaagcaagagcagtggtagctcttgtatattctatcctttgtacatatccaaaactacttgcta |
51873834 |
T |
|
| Q |
201 |
gtgagatatgtgtaaacctaagccatccccatttctctgtcccacacaaaccaacctcataacttctgatcccaaactactcataaatgaccctcctcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51873835 |
gtgagatatgtgtaaacctaagccatccccatttctctgtcccacacaaaccaacctcataacttctgatcctaaactactcataaatgaccctcctcat |
51873934 |
T |
|
| Q |
301 |
gatgaagttcaagatcaaaatgaacttcaaagatggccaactccaaa |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51873935 |
gatgaagttcaagatcaaaatgaacttcaaagatggccaactccaaa |
51873981 |
T |
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