View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_67 (Length: 346)

Name: NF6865A_low_67
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_67
NF6865A_low_67
[»] chr1 (4 HSPs)
chr1 (16-331)||(11780115-11780431)
chr1 (138-311)||(10424592-10424765)
chr1 (140-311)||(1624837-1625008)
chr1 (227-286)||(30731478-30731537)
[»] chr7 (2 HSPs)
chr7 (21-322)||(17158540-17158845)
chr7 (286-322)||(11296157-11296193)
[»] chr6 (4 HSPs)
chr6 (24-328)||(14977507-14977814)
chr6 (24-195)||(11776308-11776482)
chr6 (139-195)||(9352421-9352477)
chr6 (147-195)||(24353638-24353686)
[»] chr2 (1 HSPs)
chr2 (21-328)||(12101765-12102070)
[»] chr5 (4 HSPs)
chr5 (24-322)||(5781890-5782191)
chr5 (24-311)||(19069419-19069709)
chr5 (201-311)||(17763963-17764073)
chr5 (138-195)||(11724701-11724758)
[»] chr3 (6 HSPs)
chr3 (138-305)||(16311632-16311799)
chr3 (138-305)||(18488416-18488583)
chr3 (138-305)||(18492626-18492793)
chr3 (127-290)||(19829018-19829181)
chr3 (138-276)||(16314023-16314161)
chr3 (138-276)||(18495017-18495155)
[»] chr8 (1 HSPs)
chr8 (138-294)||(17459431-17459587)


Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 11780431 - 11780115
Alignment:
Q  16 ggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaat 115  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  11780431 ggacatcattgtcgtcaacatctttcagctttccactacataacgtgtttgacagcgtttctagtgaggagctgctactagctacgccagtgtttgaaat 11780332  T
Q  116 tgtttcccgg-ttgcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttac 214  Q
    |||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11780331 tgtttccccgattgcatgatgaaatgcattctgagagagtgaagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttac 11780232  T
Q  215 tccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatccatt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11780231 tccaacgctctcggatgatgtggaacataatcattcgcgcccacaggagctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaatt 11780132  T
Q  315 gttgagcaagatgatgt 331  Q
    |||||||| ||||||||    
T  11780131 gttgagcacgatgatgt 11780115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 138 - 311
Target Start/End: Complemental strand, 10424765 - 10424592
Alignment:
Q  138 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 237  Q
    |||||||||||||||||||| || | ||||| ||||||||||||||  ||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  10424765 gtgcattctgagagagtggaacaattgcatctgacatcgcgggaggtattggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 10424666  T
Q  238 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcc 311  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| ||||||||||||||||    
T  10424665 aatataatcgttcgcgcccacgggagctggtggagagtcctaagggttcctacgagcgtgtaccacattcatcc 10424592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 311
Target Start/End: Complemental strand, 1625008 - 1624837
Alignment:
Q  140 gcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaa 239  Q
    ||||| ||||||||| || |||| ||||| |||||||||||||| ||||| |||||     || || ||||| |||   ||||| |  ||||||||||||    
T  1625008 gcattttgagagagtagaacagttgcatctgacatcgcgggaggtgttggggaaccccacggtggatgatgtcactgttacgctttatgatgatgtggaa 1624909  T
Q  240 cataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcc 311  Q
    || |||  |||| |||| | ||| ||||| |||||||| |||||| |||| |||| ||||||||||||||||    
T  1624908 cacaatagttcgagcccgcgggagctggtcgagagtcccaagggttcccacgagcgtgtaccacattcatcc 1624837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 30731478 - 30731537
Alignment:
Q  227 ggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgc 286  Q
    ||||| |||||||||| |||||  | |||||||||| |||||||||||||| ||||||||    
T  30731478 ggatggtgtggaacatgatcatgtgagcccacaggagctggtggagagtcccaagggtgc 30731537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 17158845 - 17158540
Alignment:
Q  21 tcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgttt 120  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||  |||||| ||| |||||||||||||||||||||||||    
T  17158845 tcattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgttt 17158746  T
Q  121 cccggtt---gcatgatgaagtgcattctgagagagt-ggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactc 216  Q
    ||  |||   ||| ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||     
T  17158745 cctagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatccgatatcgcgggaggagttggagaaccctgtggttgacgatgttactg 17158646  T
Q  217 caacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatccattgt 316  Q
    | || ||||||||||||||||| ||||||||||||| |||  || |  ||||||||||||| ||||| | |||||||||||||| ||||||||| |||||    
T  17158645 cgacactctcggatgatgtggagcataatcattcgcacccctagtagttggtggagagtcccaagggggaccatgagcatgtactacattcatcaattgt 17158546  T
Q  317 tgagca 322  Q
    | ||||    
T  17158545 taagca 17158540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 322
Target Start/End: Complemental strand, 11296193 - 11296157
Alignment:
Q  286 cccatgagcatgtaccacattcatccattgttgagca 322  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  11296193 cccatgagcatgtatcacattcatcctttgttgagca 11296157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 24 - 328
Target Start/End: Original strand, 14977507 - 14977814
Alignment:
Q  24 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc 123  Q
    ||||| ||||||||||| ||||| ||| | || ||| ||||||| |  |||||||||||| || ||| |  |||||| |||||| ||||  |||| ||||    
T  14977507 ttgtcatcaacatcttttagcttcccattacacaacatgtttgatagtatttctagtgagaagttgccagaagctacaccagtgattgagtttgtgtccc 14977606  T
Q  124 g-gttgc--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaac 220  Q
      |||||  | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||| ||     ||||||||||||||| | ||    
T  14977607 cagttgcgcacgatgacgtgcattccgagagagtggagcagtcgcatccgacatcgcgggaggaggtgcagatcccaacggttgacgatgttactgctac 14977706  T
Q  221 gctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatccattgttgag 320  Q
    ||| ||  |||||||||||||||||||||||  ||| | ||| |||||||||||||| |||||| ||||||||||||| |||||||||||||||||| ||    
T  14977707 gctatcttatgatgtggaacataatcattcgaccccgcgggagctggtggagagtcccaagggttcccatgagcatgttccacattcatccattgtttag 14977806  T
Q  321 caagatga 328  Q
    || |||||    
T  14977807 catgatga 14977814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 195
Target Start/End: Complemental strand, 11776482 - 11776308
Alignment:
Q  24 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc 123  Q
    ||||||||||  ||||||||||||||| | ||||| | ||||||||| ||||||  ||||||| ||| ||  | ||| |||||||| ||  |||||||||    
T  11776482 ttgtcgtcaaactctttcagctttccattacataatgcgtttgacaaaatttctcatgaggagttgccacatgttacaccagtgttagaggttgtttccc 11776383  T
Q  124 g-gttg--catgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 195  Q
      ||||  || ||||| ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||    
T  11776382 ctgttgtgcacgatgatgtgcattctgagagagtggagcagttgcatcagtcatcgcgggaggagttggagaacc 11776308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 9352477 - 9352421
Alignment:
Q  139 tgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 195  Q
    ||||||||||||||||||| |||| || || ||||||||| |||| |||||||||||    
T  9352477 tgcattctgagagagtggaacagttgcgtctgacatcgcgagaggtgttggagaacc 9352421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 24353686 - 24353638
Alignment:
Q  147 gagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 195  Q
    ||||||| | |||||| ||||| ||||||||||||||||||||||||||    
T  24353686 gagagagcgaagcagttgcatcagacatcgcgggaggagttggagaacc 24353638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 21 - 328
Target Start/End: Original strand, 12101765 - 12102070
Alignment:
Q  21 tcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgttt 120  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |||||||| | || ||| || | ||||||||||||| |||    
T  12101765 tcattgtcgtcaacatctttcagctttccactacataacgtgtttaacaatatttctagcgaggagctaccacaagcaacacgagtgtttgaaattattt 12101864  T
Q  121 cccggtt---gcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactcc 217  Q
    |||   |   ||| ||||| |||||| ||||||||| ||||||  | ||| |||||||||||||||||||||||||||   | | ||||||||||||| |    
T  12101865 ccccaattgtgcacgatgacgtgcatcctgagagagcggagcaaacacattcgacatcgcgggaggagttggagaaccccatggctgacgatgttactac 12101964  T
Q  218 aacgctctcggatgatgtggaacata----atcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatccat 313  Q
     |  |         ||||||||||||    ||||||||||||| | ||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||    
T  12101965 gatac---------atgtggaacatatataatcattcgcgcccccgggagctggtggagagtcccaagggtgcctatgagcatgtaccacattcatcaat 12102055  T
Q  314 tgttgagcaagatga 328  Q
    ||||||||| |||||    
T  12102056 tgttgagcacgatga 12102070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 24 - 322
Target Start/End: Complemental strand, 5782191 - 5781890
Alignment:
Q  24 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc 123  Q
    ||||||||||  ||||||||||||||| | || || |||||  | |  ||||||  ||||||||||| |   |||||||||||||| ||  |||||||||    
T  5782191 ttgtcgtcaaactctttcagctttccattacacaatgtgttcaatagaatttctcctgaggagctgccatgtgctacgccagtgttagaggttgtttccc 5782092  T
Q  124 g-gttgc--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaac 220  Q
      |||||  | ||||| |||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||||    || || |||||||||   ||    
T  5782091 ttgttgcgcacgatgacgtgcattctgagagagaggagcagttgcatcagacatcgcggaaggagttggagaaccacacggtggatgatgttactgttac 5781992  T
Q  221 gctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatccattgttgag 320  Q
     || || |||||||||||||| |||||||||  ||| | ||| |||||||||||||| |||||| ||||||||| |||| ||| ||||||| || |||||    
T  5781991 actttctgatgatgtggaacacaatcattcgatcccgcgggagctggtggagagtcccaagggttcccatgagcgtgtatcacgttcatcccttattgag 5781892  T
Q  321 ca 322  Q
    ||    
T  5781891 ca 5781890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 311
Target Start/End: Complemental strand, 19069709 - 19069419
Alignment:
Q  24 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc 123  Q
    ||||||||||  ||||||||||||||| | || || | ||||||||| ||||||  | ||||||||| ||  |||||||||||||| ||  || ||||||    
T  19069709 ttgtcgtcaaactctttcagctttccattacacaatgcgtttgacaaaatttctcctaaggagctgccacgtgctacgccagtgttagaggttatttccc 19069610  T
Q  124 g-gttgc--atgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaac 220  Q
      |||||  | ||||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||||||||||     || || |||||||||   ||    
T  19069609 ctgttgcgcacgatgacgtgcattctgagagagaggagcggttgcatcagacatcgcgagaggagttggagaaccccacggtggaagatgttactgttac 19069510  T
Q  221 gctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcc 311  Q
     || ||  ||||||||||||| |||||||||  ||| ||||| |||||||||||||| ||||||  |||||||| | || |||||||||||    
T  19069509 cctttctaatgatgtggaacacaatcattcgatcccgcaggagctggtggagagtcccaagggtttccatgagcgtatatcacattcatcc 19069419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 311
Target Start/End: Original strand, 17763963 - 17764073
Alignment:
Q  201 gttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtac 300  Q
    ||||| ||||||||| | ||||| || ||||||||||||||||||||||   ||   | ||| |||||||||||||  |||||| |||||||||||||      
T  17763963 gttgatgatgttactgctacgctttctgatgatgtggaacataatcatttaagctggcgggagctggtggagagtctcaagggttcccatgagcatgtct 17764062  T
Q  301 cacattcatcc 311  Q
    |||| ||||||    
T  17764063 cacactcatcc 17764073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 11724701 - 11724758
Alignment:
Q  138 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaacc 195  Q
    ||||||||| ||||||  ||||| | ||||| |||||||||||||| |||||||||||    
T  11724701 gtgcattctaagagagcagagcaattgcatctgacatcgcgggaggtgttggagaacc 11724758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 138 - 305
Target Start/End: Original strand, 16311632 - 16311799
Alignment:
Q  138 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 237  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  16311632 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 16311731  T
Q  238 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 305  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  16311732 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 16311799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 138 - 305
Target Start/End: Original strand, 18488416 - 18488583
Alignment:
Q  138 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 237  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18488416 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18488515  T
Q  238 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 305  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  18488516 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 18488583  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 138 - 305
Target Start/End: Original strand, 18492626 - 18492793
Alignment:
Q  138 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 237  Q
    ||||||| ||||| |||||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18492626 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18492725  T
Q  238 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 305  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  18492726 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 18492793  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 127 - 290
Target Start/End: Complemental strand, 19829181 - 19829018
Alignment:
Q  127 tgcatgatgaagtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctc 226  Q
    |||| ||||| |||||||||||||||| ||||| || ||| | |||||| | || ||||||||||||||    |||  |||||||||||   || || ||    
T  19829181 tgcacgatgacgtgcattctgagagagaggagcggttgcaccagacatcacagggggagttggagaaccccacagtgaacgatgttactgttacactttc 19829082  T
Q  227 ggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccat 290  Q
     |||||||||||||| |||||||||  ||| | ||| |||||||||||||| |||||| |||||    
T  19829081 tgatgatgtggaacacaatcattcgaacccgcgggagctggtggagagtcccaagggttcccat 19829018  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 276
Target Start/End: Original strand, 16314023 - 16314161
Alignment:
Q  138 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 237  Q
    ||||||| ||||| |||||| || | ||||| |||||| ||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  16314023 gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 16314122  T
Q  238 aacataatcattcgcgcccacaggatctggtggagagtc 276  Q
    || |||||| ||||||||||| ||| |||||||||||||    
T  16314123 aatataatcgttcgcgcccacgggagctggtggagagtc 16314161  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 276
Target Start/End: Original strand, 18495017 - 18495155
Alignment:
Q  138 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 237  Q
    ||||||| ||||| |||||| || | ||||| |||||| ||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18495017 gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18495116  T
Q  238 aacataatcattcgcgcccacaggatctggtggagagtc 276  Q
    || |||||| ||||||||||| ||| |||||||||||||    
T  18495117 aatataatcgttcgcgcccacgggagctggtggagagtc 18495155  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 294
Target Start/End: Original strand, 17459431 - 17459587
Alignment:
Q  138 gtgcattctgagagagtggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 237  Q
    |||||||| |||||||  ||||| | ||||||||||||||||||  ||||||||||||   |||| |||||||| |||   ||||| ||  |||||||||    
T  17459431 gtgcattccgagagagcagagcaattgcatccgacatcgcgggaaaagttggagaaccccatagtggacgatgtcactgttacgctttctaatgatgtgg 17459530  T
Q  238 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagc 294  Q
    |||| ||||||||| |||| | |||  ||||||||||||  || ||| |||||||||    
T  17459531 aacacaatcattcgagcccgcgggagatggtggagagtctcaacggtccccatgagc 17459587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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