View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_69 (Length: 345)
Name: NF6865A_low_69
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_69 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 322
Target Start/End: Original strand, 6236342 - 6236647
Alignment:
| Q |
14 |
atatcatggtgtttctaaattatagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattg |
113 |
Q |
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| T |
6236342 |
atatcatggtgtttctaaattttagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattg |
6236441 |
T |
|
| Q |
114 |
aaaacctaggtgataggtgaaaatctaannnnnnnnnnnnnnngatcaagcgaagaaattcaataaaactagagagggccagaacccataacaaggtcta |
213 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
6236442 |
aaaacctaggtgataggtgaaaatctaattttttttttttt---atcaagcgaagaaattcaataaaactgaagagggccagaacccataacaaagtcta |
6236538 |
T |
|
| Q |
214 |
catcaggaagaaacaaaaacagaaaaggcagaattacatcaaaatcctataataaggaagtcctgaaccctctctagagagaaaagaagcaataaagctg |
313 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6236539 |
catcaggaagaaacaaaaatagaaaaggcagaattacatcaaaatcctataataaggaagtcctgaaccctctctagagagaaaagaagcaataaagcag |
6236638 |
T |
|
| Q |
314 |
ggtggtgag |
322 |
Q |
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||||||||| |
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| T |
6236639 |
ggtggtgag |
6236647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 141
Target Start/End: Complemental strand, 33891908 - 33891807
Alignment:
| Q |
36 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaa |
135 |
Q |
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|||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||| |||||||||||||| | || ||||||| |
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| T |
33891908 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaa |
33891813 |
T |
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| Q |
136 |
atctaa |
141 |
Q |
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|||||| |
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| T |
33891812 |
atctaa |
33891807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 33952340 - 33952441
Alignment:
| Q |
36 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaa |
135 |
Q |
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|||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||| |||||||||||||| | || ||||||| |
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| T |
33952340 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaa |
33952435 |
T |
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| Q |
136 |
atctaa |
141 |
Q |
| |
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|||||| |
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|
| T |
33952436 |
atctaa |
33952441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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