View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_70 (Length: 344)

Name: NF6865A_low_70
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_70
NF6865A_low_70
[»] chr7 (5 HSPs)
chr7 (1-343)||(45341220-45341560)
chr7 (128-268)||(4548267-4548409)
chr7 (99-283)||(6011403-6011586)
chr7 (207-270)||(11622442-11622506)
chr7 (127-215)||(19432388-19432474)
[»] chr3 (4 HSPs)
chr3 (63-273)||(19800545-19800754)
chr3 (63-214)||(16018989-16019136)
chr3 (152-211)||(25387029-25387088)
chr3 (1-56)||(14258969-14259023)
[»] chr8 (6 HSPs)
chr8 (63-284)||(24819942-24820160)
chr8 (61-215)||(15061971-15062124)
chr8 (128-280)||(15662802-15662954)
chr8 (65-207)||(16723492-16723632)
chr8 (117-234)||(15550776-15550892)
chr8 (165-286)||(22502004-22502125)
[»] chr4 (4 HSPs)
chr4 (63-229)||(16673431-16673597)
chr4 (101-281)||(18448904-18449084)
chr4 (128-177)||(13933031-13933079)
chr4 (9-61)||(16673668-16673720)
[»] scaffold0035 (1 HSPs)
scaffold0035 (61-279)||(71223-71437)
[»] scaffold0113 (1 HSPs)
scaffold0113 (66-272)||(24134-24339)
[»] scaffold0338 (1 HSPs)
scaffold0338 (61-214)||(18545-18696)
[»] chr5 (2 HSPs)
chr5 (61-228)||(26058031-26058196)
chr5 (101-214)||(19079584-19079696)
[»] chr6 (4 HSPs)
chr6 (61-275)||(13123109-13123323)
chr6 (66-272)||(12331737-12331940)
chr6 (63-213)||(23846137-23846286)
chr6 (66-145)||(20891709-20891788)
[»] scaffold0001 (1 HSPs)
scaffold0001 (297-342)||(420420-420465)
[»] chr2 (2 HSPs)
chr2 (101-234)||(28579640-28579771)
chr2 (61-115)||(16592297-16592351)
[»] scaffold0086 (1 HSPs)
scaffold0086 (129-211)||(11300-11379)


Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 45341220 - 45341560
Alignment:
Q  1 aatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataagtcccaagcactcacaagcaatacgaactcaaacctgcacgtca 100  Q
    ||||||||||||||||||| ||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  45341220 aatctcatacataaataaaaaacaattc--ggcaataatataaatacatagcataagtcccaagcactcacaagcaatacgaactcaaacttgcacgtcg 45341317  T
Q  101 tctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45341318 tctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattc 45341417  T
Q  201 aaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtgaatattatcttaaaatcaatcataacacatcaattttcatt 300  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45341418 aaggatttcaagtatcacatatacacatgttcatcatcccataatactaacatcatgtgaatattatcttaaaatcaatcataacacatcaattttcatt 45341517  T
Q  301 tcaacatcaagaggtcatcacatcaccaacaattaaattcatg 343  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45341518 tcaacatcaagaggtcatcacatcaccaacaattaaattcatg 45341560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 128 - 268
Target Start/End: Original strand, 4548267 - 4548409
Alignment:
Q  128 cggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacat----ata 223  Q
    |||||||||||||||| ||| |||||| | ||| |||| ||||||||| |||||||||||||||| ||||||||||||||||||  |||| ||    |||    
T  4548267 cggtcaaccaaacgactatt-aggggtgagataatattccacataatacaatataatcaaagaaa-agcattcaaggatttcaatcatcatatatagata 4548364  T
Q  224 cacatgttcattatcccataatactaacatcatgtgaatattatc 268  Q
     ||||| ||| ||||| |||||||| |||||||||||||||||||    
T  4548365 tacatgctcaatatcctataatactgacatcatgtgaatattatc 4548409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 283
Target Start/End: Complemental strand, 6011586 - 6011403
Alignment:
Q  99 catctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcat 198  Q
    |||||||||||||| || |||||| ||  |||||||||||||||| | |||||||||| ||| || ||||||||| || |||||| || ||| ||| |||    
T  6011586 catctacaccatttttagaaatggtgaggcggtcaaccaaacgacaactgaggggttagataata-ttcacataaaaagatataagcatagatataacat 6011488  T
Q  199 tcaaggatttcaagtatcacatatacacatgttcattatcccat-aatactaacatcatgtgaatattatcttaaaatcaatcata 283  Q
    || | || ||||  ||||||||| | |||| ||||| || || | |||||||||||| | ||||||| ||||| ||  ||||||||    
T  6011487 tctacga-ttcacatatcacatacatacatattcatcattccttgaatactaacatcttatgaatatcatcttcaatccaatcata 6011403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 270
Target Start/End: Complemental strand, 11622506 - 11622442
Alignment:
Q  207 ttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgtgaatattatctt 270  Q
    ||||||||||||||||| |||||||||| | ||| | |||||||||||||| | |||||||||||    
T  11622506 ttcaagtatcacatatatacatgttcatcattcctaaaatactaacatcatataaatattatctt 11622442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 19432474 - 19432388
Alignment:
Q  127 acggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtat 215  Q
    ||||||||||||||||| |  | || |||| ||| |||| || ||||||||||||||||||  ||||||||||||| ||||||||||||    
T  19432474 acggtcaaccaaacgactac-gtggagttagataatattccatataataaaatataatcaat-aaatagcattcaatgatttcaagtat 19432388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 63 - 273
Target Start/End: Original strand, 19800545 - 19800754
Alignment:
Q  63 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 162  Q
    |||||| ||||||||| | |||||||||||||||||| | ||||||||| |||||||||||||  | ||||||||||| |||| ||  |||| | ||| |    
T  19800545 agcacttacaagcaatgcaaactcaaacctgcacgtcgtgtacaccatt-ataaaaatggcgaggcagtcaaccaaacaaccactggtgggtgagataat 19800643  T
Q  163 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtgaat 262  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| ||||| |||| |||| | ||||||| ||||||| ||||    
T  19800644 attccacataataaaatctaatcaaagaaatagcattcaaggatttcaaataccacatatatacatgctcatcatcctagaatactatcatcatgcgaat 19800743  T
Q  263 attatcttaaa 273  Q
    |||||| ||||    
T  19800744 attatcataaa 19800754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 16019136 - 16018989
Alignment:
Q  63 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 162  Q
    ||||||||||| ||| | |||||||||| |||||||| || |||||||||||| ||||||  |   ||||||||||| ||||||||  || ||| ||| |    
T  16019136 agcactcacaaacaacaagaactcaaacatgcacgtcgtccacaccatttatacaaatgggtaggtggtcaaccaaatgaccattg-tggtttatataat 16019038  T
Q  163 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagta 214  Q
    ||| || ||||||||| ||   || | |||||||||||||||||||||||||    
T  16019037 attccatataataaaacat--gcata-aaatagcattcaaggatttcaagta 16018989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 25387088 - 25387029
Alignment:
Q  152 ggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaa 211  Q
    |||||||||  |||||||||||||||||||||| || |||||| ||||||| ||||||||    
T  25387088 ggttaaataacatttcacataataaaatataataaaggaaataacattcaaagatttcaa 25387029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 14258969 - 14259023
Alignment:
Q  1 aatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataa 56  Q
    |||||||||||||| || ||||||||||||  |||||||||||||||||| |||||    
T  14258969 aatctcatacataa-tagacaacaagtctcatcaataatataaatacataacataa 14259023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 63 - 284
Target Start/End: Complemental strand, 24820160 - 24819942
Alignment:
Q  63 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 162  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||  |||||||||||||||| | | ||| |||| ||| |    
T  24820160 agcactcacaagcaatacga-ctcaaacctgcacgtcatctacaccatttatacaaatggtgaggcggtcaaccaaacgacaact-aggagttagataat 24820063  T
Q  163 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtgaat 262  Q
    ||| |||||| ||||||| || || | |||||| |||||||||||||||  |||||||||| ||||| |||| |||| | |||||||||||| | |||||    
T  24820062 attccacatagtaaaataaaagcaca-aaatagaattcaaggatttcaaacatcacatatatacatgctcatcatcctagaatactaacatcgtatgaat 24819964  T
Q  263 attatcttaaaatcaatcataa 284  Q
    ||| || |||||||||| ||||    
T  24819963 attgtcataaaatcaatgataa 24819942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 215
Target Start/End: Original strand, 15061971 - 15062124
Alignment:
Q  61 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 160  Q
    ||||||||||||||||||| |||||||| | |||||||| ||||||||||| ||| ||||||  |  ||||||||||||| |||| |||  ||||| |||    
T  15061971 caagcactcacaagcaataggaactcaatcatgcacgtcgtctacaccattcatacaaatgggtaggcggtcaaccaaacaaccactga-aggttagata 15062069  T
Q  161 gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtat 215  Q
     |||| |||||||||||||||||||||  ||||  || |||||||||||||||||    
T  15062070 atattccacataataaaatataatcaagtaaatgacagtcaaggatttcaagtat 15062124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 280
Target Start/End: Complemental strand, 15662954 - 15662802
Alignment:
Q  128 cggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacaca 227  Q
    |||||||||||||||||| |  ||||||| ||| |||| ||||||| || ||| || || | ||||||||||| ||  |||||||||||||||||| |||    
T  15662954 cggtcaaccaaacgaccactagggggttagataatatt-cacataaaaagatacaagcacaaaaatagcattctagattttcaagtatcacatatataca 15662856  T
Q  228 tgttcatta-tcccataatactaacatcatgtgaatattatcttaaaatcaatc 280  Q
    || ||| || ||| | |||||||||||| | ||||||||||||| || ||||||    
T  15662855 tgctcaatattcctagaatactaacatcgtatgaatattatcttcaattcaatc 15662802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 207
Target Start/End: Original strand, 16723492 - 16723632
Alignment:
Q  65 cactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtat 164  Q
    ||||||||||||||||| ||||||  ||||||||  ||||||||||| ||| ||||||  |  |||| || |||||||||| |||  ||||| ||| |||    
T  16723492 cactcacaagcaatacggactcaagtctgcacgttgtctacaccattcatacaaatgggtaggcggtaaatcaaacgaccaatga--ggttagataatat 16723589  T
Q  165 ttcacataataaaatataatcaaagaaatagcattcaaggatt 207  Q
    |||| || |||||||| |||||||| ||||| |||||| ||||    
T  16723590 ttcatatgataaaataaaatcaaagtaatagaattcaatgatt 16723632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 234
Target Start/End: Complemental strand, 15550892 - 15550776
Alignment:
Q  117 aaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatc 216  Q
    |||||| || || |||||||||||||||| | || ||||| ||| |||| ||||||| || ||||||||| | ||||||||||| |  |||||||| |||    
T  15550892 aaatggtgagacagtcaaccaaacgaccactaagaggttatataatatt-cacataaaaatatataatcacaaaaatagcattctataatttcaagaatc 15550794  T
Q  217 acatatacacatgttcat 234  Q
    ||||||| ||||| ||||    
T  15550793 acatatatacatgctcat 15550776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 22502125 - 22502004
Alignment:
Q  165 ttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatccc-ataatactaacatcatgtgaata 263  Q
    ||||||||| || |||||| || | | ||| ||||| |||||| ||| ||||||||||| ||||| |||| || || | ||||||| |||||  ||||||    
T  22502125 ttcacataaaaatatataagcacaaatataacattctaggatt-caaatatcacatatatacatgctcatcattcctagaatactaccatcacatgaata 22502027  T
Q  264 ttatcttaaaatcaatcataaca 286  Q
    ||||||| || ||||||||||||    
T  22502026 ttatctttaattcaatcataaca 22502004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 63 - 229
Target Start/End: Complemental strand, 16673597 - 16673431
Alignment:
Q  63 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 162  Q
    |||||||||||| |||||||||||||||||||| ||  |||||||||||| || |||| | ||   | ||||||||||||||| || |  |||| ||| |    
T  16673597 agcactcacaagtaatacgaactcaaacctgcatgttgtctacaccatttttagaaatagtgaggtgctcaaccaaacgaccactgggatgttagataat 16673498  T
Q  163 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatg 229  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  16673497 attccacataataaaatttaatcaaagaaatagcattcaaggatttcaagtatcaaatatatacatg 16673431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 281
Target Start/End: Original strand, 18448904 - 18449084
Alignment:
Q  101 tctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattc 200  Q
    |||||||||||| || |||||| ||  |||||||| ||||||||| |  ||||||| ||| |||| ||||||| ||  ||||| || | || |||||||     
T  18448904 tctacaccatttttataaatggtgaggcggtcaactaaacgaccactagggggttagataatatt-cacataaaaacgtataagcacaaaagtagcatta 18449002  T
Q  201 aaggatttcaagtatcacatatacacatgttcattatccc-ataatactaacatcatgtgaatattatcttaaaatcaatca 281  Q
     || ||||||||||||||||||  |||||  || ||| |  | |||||||||||||||||||||||||||| || |||||||    
T  18449003 tagaatttcaagtatcacatatttacatgcacaatattcttacaatactaacatcatgtgaatattatcttcaactcaatca 18449084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 13933031 - 13933079
Alignment:
Q  128 cggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaa 177  Q
    |||||||||||||||||| || ||||||| ||| ||||||||||||||||    
T  13933031 cggtcaaccaaacgaccactg-ggggttagataatatttcacataataaa 13933079  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 16673720 - 16673668
Alignment:
Q  9 acataaataaacaacaagtctcggcaataatataaatacatagcataagtccc 61  Q
    ||||||||||||||||||| |  ||||||| ||||||||| | ||||||||||    
T  16673720 acataaataaacaacaagttttagcaataacataaatacacaacataagtccc 16673668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 61 - 279
Target Start/End: Complemental strand, 71437 - 71223
Alignment:
Q  61 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 160  Q
    ||||||||||||||||||| |||||  | | |||||  | |||||| |||||||| ||||||  |  |||||||||||||||||| |||||| ||| |||    
T  71437 caagcactcacaagcaataagaacttgatcatgcacaccgtctacaacatttatacaaatgggtaggcggtcaaccaaacgaccagtgaggg-ttagata 71339  T
Q  161 gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtga 260  Q
     |||| |||||||||| ||||||||||||||   ||||||||| ||||||||||| ||||| | |||| ||||| |||| | ||||||||||||||| ||    
T  71338 atattccacataataagatataatcaaagaa---gcattcaagaatttcaagtattacatacatacatattcatcatcctagaatactaacatcatgcga 71242  T
Q  261 atattatcttaaaatcaat 279  Q
    |||||||| |||| |||||    
T  71241 atattatcctaaactcaat 71223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 66 - 272
Target Start/End: Complemental strand, 24339 - 24134
Alignment:
Q  66 actcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatt 165  Q
    |||||||| ||||| |  ||||| | |||||||| ||||||||||| ||| ||||||  |  ||||||||||||| |||| |||||| ||| |||  |||    
T  24339 actcacaaacaataagttctcaatcatgcacgtcgtctacaccattcatacaaatgggtaggcggtcaaccaaacaaccactgaggg-ttagataacatt 24241  T
Q  166 tcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgtgaatat 264  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||||||||  || ||| |||| ||||| | ||| | ||||||||||||||||||||||    
T  24240 tcacataataaaatataatcata-aaataacattcaaggatttcaagtatagcacatatacatattcatcactcctagaatactaacatcatgtgaatat 24142  T
Q  265 tatcttaa 272  Q
    ||||||||    
T  24141 tatcttaa 24134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 61 - 214
Target Start/End: Complemental strand, 18696 - 18545
Alignment:
Q  61 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 160  Q
    |||||||||||||| |||| |||||||| | |||||| | | ||||||||| ||| ||||||  | ||||||||||||||||||| ||| |||||| |||    
T  18696 caagcactcacaagaaataagaactcaatcatgcacgccgtttacaccattcatacaaatgggtagacggtcaaccaaacgaccactga-gggttagata 18598  T
Q  161 gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagta 214  Q
     |||| |||||||||||||||||||| | ||| |||||||||||||||||||||    
T  18597 atattccacataataaaatataatcata-aaacagcattcaaggatttcaagta 18545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 61 - 228
Target Start/End: Original strand, 26058031 - 26058196
Alignment:
Q  61 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 160  Q
    |||||||| | |||||||| |||||||| | |||||  | ||||||||||||||| ||||||  |  || ||||||||| ||||| | |||||||| |||    
T  26058031 caagcacttataagcaataagaactcaatcatgcactccgtctacaccatttatacaaatgggtaggcgatcaaccaaatgaccact-aggggttagata 26058129  T
Q  161 gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacat 228  Q
     |||| |||||||||||||||||||| | ||||| |||||||||||||||||||| | | ||||||||    
T  26058130 atattccacataataaaatataatcata-aaatatcattcaaggatttcaagtattatacatacacat 26058196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 19079696 - 19079584
Alignment:
Q  101 tctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattc 200  Q
    |||||||||||| ||||||||| ||  ||||||||||||| |||| || | ||||| |||  | ||||||||| || |||||| || ||||||||||||     
T  19079696 tctacaccatttttaaaaatggtgagccggtcaaccaaacaaccactgggaggttagataaca-ttcacataaaaagatataagcacagaaatagcatta 19079598  T
Q  201 aaggatttcaagta 214  Q
     ||||||| |||||    
T  19079597 taggatttaaagta 19079584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 275
Target Start/End: Complemental strand, 13123323 - 13123109
Alignment:
Q  61 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 160  Q
    ||||||||||||||||||| ||| ||||   |||||| | ||||||||||| ||| ||||||  || ||| ||| ||||||| || ||| |||||| ||     
T  13123323 caagcactcacaagcaataagaaatcaattttgcacgccgtctacaccattcatacaaatgggtaagcggccaatcaaacgatcactga-gggttagatt 13123225  T
Q  161 gtatttcacataataaaatataatc-aaagaaatagcattcaaggatttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgt 258  Q
     || ||||| ||||||||||||||| ||| ||||||||||||| |||||||| ||  ||| ||  ||||| |||| | ||  | ||||||||||| ||||    
T  13123224 ata-ttcacgtaataaaatataatcaaaataaatagcattcaatgatttcaattaatacacatgtacatgctcatcattcgtaaaatactaacataatgt 13123126  T
Q  259 gaatattatcttaaaat 275  Q
    |||||||||||| ||||    
T  13123125 gaatattatcttcaaat 13123109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 272
Target Start/End: Complemental strand, 12331940 - 12331737
Alignment:
Q  66 actcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatt 165  Q
    |||||||||||||| ||||| || | | || ||| ||||||||||| ||| ||||||  |  |||||||| ||||||||| |  ||||||| ||  ||||    
T  12331940 actcacaagcaataagaacttaatcatacatgtcgtctacaccattcatacaaatgggtaggcggtcaactaaacgaccact--ggggttagattatatt 12331843  T
Q  166 tcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgtgaatat 264  Q
     ||||||||||||||||| || | |||||| |||| |||||||  |||||  || ||| |||| ||||| | ||| | |||||||||||||| |||||||    
T  12331842 ccacataataaaatataaacata-aaatagaattctaggattt-tagtatagcacatatacatattcatcactcctagaatactaacatcatatgaatat 12331745  T
Q  265 tatcttaa 272  Q
    ||||||||    
T  12331744 tatcttaa 12331737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 213
Target Start/End: Complemental strand, 23846286 - 23846137
Alignment:
Q  63 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 162  Q
    ||||||||||| ||||| ||| |||||| |||| |  ||||||||||||| | ||||| |  |  |||| ||||||||||||| ||  |||| | ||| |    
T  23846286 agcactcacaatcaataagaaatcaaacatgcatgctatctacaccattttttaaaatagtaatgcggttaaccaaacgaccactggagggtgagataat 23846187  T
Q  163 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagt 213  Q
    ||||||||| ||||||||||| || | ||||| |||||| |||||||||||    
T  23846186 atttcacatgataaaatataaacata-aaataacattcatggatttcaagt 23846137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 20891709 - 20891788
Alignment:
Q  66 actcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgacca 145  Q
    |||||||||||||| ||| |||| | |||||| | ||||||||||| ||| ||||||  |  ||||||||||||||||||    
T  20891709 actcacaagcaataagaaatcaatcatgcacgccgtctacaccattcatacaaatgggtaggcggtcaaccaaacgacca 20891788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 420420 - 420465
Alignment:
Q  297 catttcaacatcaagaggtcatcacatcaccaacaattaaattcat 342  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  420420 catttcaacatcaagaggtcatcacatcaccaataattaaattcat 420465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 234
Target Start/End: Complemental strand, 28579771 - 28579640
Alignment:
Q  101 tctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattc 200  Q
    ||||||| |||| || |||||| || | |||||||||||||||||||| ||||||| ||| || |||||| || || |||||| || | | ||||||||     
T  28579771 tctacactatttttacaaatggagagatggtcaaccaaacgaccattgtggggttagataata-ttcacacaaaaagatataagcacaaatatagcattt 28579673  T
Q  201 aaggatttcaagtatcacatatacacatgttcat 234  Q
     |||| ||||| ||||||||||| ||||| ||||    
T  28579672 tagga-ttcaaatatcacatatatacatgctcat 28579640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 16592351 - 16592297
Alignment:
Q  61 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttata 115  Q
    ||||||||||| ||||||| |||||||| |||||||| | ||| |||||||||||    
T  16592351 caagcactcactagcaataagaactcaatcctgcacgccgtctccaccatttata 16592297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 11379 - 11300
Alignment:
Q  129 ggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaa 211  Q
    |||||||||||||| || || |||||||||||||||| |||| ||| ||| ||||||||| ||| || |||||||||||||||    
T  11379 ggtcaaccaaacgatcactg-ggggttaaatagtattccacacaat-aaacataatcaaataaa-agtattcaaggatttcaa 11300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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