View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_75 (Length: 337)
Name: NF6865A_low_75
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_75 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 3602534 - 3602196
Alignment:
| Q |
1 |
actaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtactaaatttgaacccttattaata---ta |
97 |
Q |
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| T |
3602534 |
actaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtagtaaatttgaacccttattaataatata |
3602435 |
T |
|
| Q |
98 |
ttgtattatgtgtaagttttcattgtaagaaa-caatatagttaagaacctatttaatattttttat----tccaaaactaggtgatagtgagagggcag |
192 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| |
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| T |
3602434 |
ttgtattatgtgtaagttttcattgtaagaaaacaatatagttaagaacctatttaatattttttatatattcctaaaataggtgatagtgagagggcag |
3602335 |
T |
|
| Q |
193 |
tgaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgtgttaga |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3602334 |
tgaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgtattaga |
3602235 |
T |
|
| Q |
293 |
gaaattgcaaccttatttggaaaatggcaaagtgaaacc |
331 |
Q |
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| T |
3602234 |
gaaattgcaaccttatttggaaaatggcaaagtgaaacc |
3602196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 4 - 327
Target Start/End: Complemental strand, 3598371 - 3598043
Alignment:
| Q |
4 |
aaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtactaaatttgaacccttattaatatattgtat |
103 |
Q |
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| T |
3598371 |
aaggagaattatgaagaaattactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtattaaatttgaatttttattaatatgttgtat |
3598272 |
T |
|
| Q |
104 |
tatgtgtaagttttcattgtaagaaa-caatatagttaagaacctatttaatattttttat----tccaaaactaggtgatagtgagagggcagtgaagg |
198 |
Q |
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| T |
3598271 |
aatgtgtaagttttcattgtaagaaaacaatatagttaagaacctatttaatattttttatatattccaaaaataggtgatagtgagagggcagtgaagg |
3598172 |
T |
|
| Q |
199 |
ctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgtgttagagaaatt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3598171 |
ctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagcagtgttagagaaatt |
3598072 |
T |
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| Q |
299 |
gcaaccttatttggaaaatggcaaagtga |
327 |
Q |
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| T |
3598071 |
gcaaccttatttggaaaatggcagagtga |
3598043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 4 - 331
Target Start/End: Complemental strand, 3595146 - 3594814
Alignment:
| Q |
4 |
aaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtactaaatttgaacccttattaatatattgtat |
103 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| |
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| T |
3595146 |
aaggagaattatgaagaaattactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtattaaatttgaatttttattaatatgttgtat |
3595047 |
T |
|
| Q |
104 |
tatgtgtaagttttcattgta-agaaacaatatagttaagaacctatttaatattttttat----tccaaaactaggtgatagtgagagggcagtgaagg |
198 |
Q |
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|||||||||||||||||||| | ||||||||||||||| |||||||| |||||||||||| ||||||| |||||||||||||||||||| |||||| |
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| T |
3595046 |
aatgtgtaagttttcattgtataaaaacaatatagttaaaaacctattaaatattttttatatattccaaaaataggtgatagtgagagggcactgaagg |
3594947 |
T |
|
| Q |
199 |
ctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgtgttagagaaatt |
298 |
Q |
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||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3594946 |
ctgtaaatgaaggaggaaaatttttgacaatactaccacctggaactccaccagctatcccttttgcactcacttcagatggagctgtgttagagaaatt |
3594847 |
T |
|
| Q |
299 |
gcaaccttatttggaaaatggcaaagtgaaacc |
331 |
Q |
| |
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| ||||||| ||||||||||||||||||||||| |
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| T |
3594846 |
gaaaccttacttggaaaatggcaaagtgaaacc |
3594814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 3583585 - 3583665
Alignment:
| Q |
251 |
agctatccctttcttactcacttcagatggagctgtgttagagaaattgcaaccttatttggaaaatggcaaagtgaaacc |
331 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| |
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| T |
3583585 |
agctatcactttcttactcacttcagatggagcagtgttagagaaattgaaaccttacttggaaaatggcaaactgaaacc |
3583665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 12877018 - 12877079
Alignment:
| Q |
4 |
aaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagat |
65 |
Q |
| |
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|||||||||| |||||| || |||| |||||||||||||||| |||| ||||||||||||| |
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| T |
12877018 |
aaggagaattttgaagacctgcctgagaagtttgatgtggtgtttgatacagtaggtaagat |
12877079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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