View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_77 (Length: 329)

Name: NF6865A_low_77
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_77
NF6865A_low_77
[»] scaffold1583 (2 HSPs)
scaffold1583 (3-142)||(637-776)
scaffold1583 (205-291)||(488-574)
[»] chr7 (2 HSPs)
chr7 (3-142)||(14638633-14638772)
chr7 (205-291)||(14638838-14638924)
[»] chr1 (2 HSPs)
chr1 (4-142)||(14275912-14276050)
chr1 (205-291)||(14276113-14276199)
[»] chr8 (2 HSPs)
chr8 (4-142)||(12921596-12921732)
chr8 (205-291)||(12921448-12921534)


Alignment Details
Target: scaffold1583 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold1583
Description:

Target: scaffold1583; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 776 - 637
Alignment:
Q  3 cgagtttggagatggtggtgttttgttcaggtcaggtggagaaggtcgtggaggaggagaaggtgaacatggtgaaggcggtggcgatggtgttctggct 102  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  776 cgagtttggagatggtggtgttttgtttaggtctggtggagaaggtggtggaggaggagaaggtgaccatggtgaaggcggtggcgatggtgttctcgct 677  T
Q  103 cttttggcttttcctttagttctggccatggtgtagatct 142  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  676 cttttggcttttcctttggttctggccatggtgtggatct 637  T

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Target: scaffold1583; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 205 - 291
Target Start/End: Complemental strand, 574 - 488
Alignment:
Q  205 cttcttttcttgaagaaggagggagtgagatacgtaggagaagagagagaagggcaaaacagcttttatttgattgatggtggtttt 291  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  574 cttcttttcttgaagaagtagggagtgagatacgtaggagaagagagagaagggcaaaacagcttttacttgattgatggtggtttt 488  T

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Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 14638633 - 14638772
Alignment:
Q  3 cgagtttggagatggtggtgttttgttcaggtcaggtggagaaggtcgtggaggaggagaaggtgaacatggtgaaggcggtggcgatggtgttctggct 102  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||| | ||||||||| |||||||||||||||||||||    
T  14638633 cgagtttggagatggtggtgttttgttcaggtctggtggagaaggtggtggaggaggagaatgtgaccgtggtgaaggtggtggcgatggtgttctggct 14638732  T
Q  103 cttttggcttttcctttagttctggccatggtgtagatct 142  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  14638733 cttttggcttttcctttggttctggccatggtgtggatct 14638772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 14638838 - 14638924
Alignment:
Q  205 cttcttttcttgaagaaggagggagtgagatacgtaggagaagagagagaagggcaaaacagcttttatttgattgatggtggtttt 291  Q
    ||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  14638838 cttcttttcttgaagaagtggggagtgagatacgtaggagaagaaagagaagggcaaaacagcttttacttgattgatggtggtttt 14638924  T

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Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 4 - 142
Target Start/End: Original strand, 14275912 - 14276050
Alignment:
Q  4 gagtttggagatggtggtgttttgttcaggtcaggtggagaaggtcgtggaggaggagaaggtgaacatggtgaaggcggtggcgatggtgttctggctc 103  Q
    |||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||  |||| ||||||||||||||||||||||||||| ||||||    
T  14275912 gagtttggagatggcggtgttttgtttaggtcaggtggagaaggtggtggaggaggagacagtgaccatggtgaaggcggtggcgatggtgttttggctc 14276011  T
Q  104 ttttggcttttcctttagttctggccatggtgtagatct 142  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  14276012 ttttggcttttcctttggttctggccatggtgtggatct 14276050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 14276113 - 14276199
Alignment:
Q  205 cttcttttcttgaagaaggagggagtgagatacgtaggagaagagagagaagggcaaaacagcttttatttgattgatggtggtttt 291  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  14276113 cttcttttcttgaagaagtagggagtgagatacgtaggagaagagagagaagggcaaaacagctttttcttgattgatggtggtttt 14276199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 4 - 142
Target Start/End: Complemental strand, 12921732 - 12921596
Alignment:
Q  4 gagtttggagatggtggtgttttgttcaggtcaggtggagaaggtcgtggaggaggagaaggtgaacatggtgaaggcggtggcgatggtgttctggctc 103  Q
    ||||||| | |||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || |||||||||||||  ||||||||||||||||    
T  12921732 gagtttgaaaatggtggtgttttgtttaggtcaggtggagaaggtggtggaggaggagaaggtgaccacggtgaaggcggtg--gatggtgttctggctc 12921635  T
Q  104 ttttggcttttcctttagttctggccatggtgtagatct 142  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  12921634 ttttggcttttcctttggttctggccatggtgtagatct 12921596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 205 - 291
Target Start/End: Complemental strand, 12921534 - 12921448
Alignment:
Q  205 cttcttttcttgaagaaggagggagtgagatacgtaggagaagagagagaagggcaaa-acagcttttatttgattgatggtggtttt 291  Q
    |||||||||| ||||||| ||||||| ||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  12921534 cttcttttct-gaagaagtagggagtcagatacgtatgagaagagagagaagggcaaagccagcttttatttgattgatggtggtttt 12921448  T

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