View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6865A_low_83 (Length: 320)
Name: NF6865A_low_83
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_83 |
 | |
|
| [»] scaffold0159 (1 HSPs) |
| | |
|
| [»] scaffold0380 (2 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 304
Target Start/End: Original strand, 49952974 - 49953272
Alignment:
| Q |
7 |
tgagatggacatcaaagttacatccataatcttatgacattacaagtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttatt |
106 |
Q |
| |
|
|||||| ||||| | ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
49952974 |
tgagattgacataacagttacatccaaaatcttatgacattataagtcatctcacttatatattgttcaatatctattatatgccattcaatgtgttatt |
49953073 |
T |
|
| Q |
107 |
ttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttg |
206 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49953074 |
ttaatccacacttgacacattaacatctctcaattaaatatgagactcttcgtgtccgtgatccaccaccacgaagcacttccgctccccaaaaatgttg |
49953173 |
T |
|
| Q |
207 |
aagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcg-aacattgtagaaaaaacaaccacacaagtgagaatgatgtc |
304 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
49953174 |
aagcgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcgaaacattgcagaaaaaacaaccacacaagtgagaatgatgtc |
49953272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 7 - 304
Target Start/End: Complemental strand, 39974981 - 39974683
Alignment:
| Q |
7 |
tgagatggacatcaaagttacatccataatcttatgacattacaagtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttatt |
106 |
Q |
| |
|
|||||| ||||||| |||||||| || ||||||| || |||| |||||| |||| |||| || ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39974981 |
tgagattgacatcacagttacattcaaaatcttaagagattatgagtcattccactgatatgttattcaatatctattatatggcattcaatatgttatt |
39974882 |
T |
|
| Q |
107 |
ttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttg |
206 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||||||| | || |||||| ||||| | |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39974881 |
ttaacccacacttgacacattaccatctctcaattaaatacgatactctttgtgtccgcgatccaccaccacgaagcacttccactccccaaaaatgttg |
39974782 |
T |
|
| Q |
207 |
aagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgtc |
304 |
Q |
| |
|
||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
39974781 |
aagcgtatatgatatcaccattggaacttacgggggagacaacacttgtgtgattcgacacattgcagaaaaaacaaccacacaggtgagaatgatgtc |
39974683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 5 - 251
Target Start/End: Complemental strand, 282059 - 281813
Alignment:
| Q |
5 |
aatgagatggacatcaaagttacatccataatcttatgacattacaagtcatctcacttatatattgttcaatatctattatatggcattcaatgtgtta |
104 |
Q |
| |
|
|||||||| ||||||| ||||||||||| ||||| | ||||||| |||||||||||| |||| ||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
282059 |
aatgagattgacatcacagttacatccaaaatctcaagacattatgagtcatctcactaatatgttgttcaatatatattatatggaattcaatgtgtta |
281960 |
T |
|
| Q |
105 |
ttttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgt |
204 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||| | ||||||||||||||| | ||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
281959 |
ttttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacacagcacttccgctccacaaaaatgt |
281860 |
T |
|
| Q |
205 |
tgaagtgtatatgatatcaccgttgggacttacgggggagacaacac |
251 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
281859 |
tgaagcgtatatgatatcaccattgggacttacgggggagacaacac |
281813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 51 - 303
Target Start/End: Complemental strand, 13228783 - 13228533
Alignment:
| Q |
51 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgag |
150 |
Q |
| |
|
||||||||||||||||| || |||| ||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
13228783 |
agtcatctcacttatatgtttctcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctctccattaagtatgag |
13228686 |
T |
|
| Q |
151 |
actcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaaca |
250 |
Q |
| |
|
||| || ||||||| |||||||||||| || ||||| |||||||||||||||||||| | ||||||||||||| ||| ||||| |||||| ||||| |
|
|
| T |
13228685 |
actttttgtgtctgcgatccaccaccaaaaaccacttatgctccccaaaaatgttgaagcggatatgatatcaccattgaaactta-tggggagccaaca |
13228587 |
T |
|
| Q |
251 |
cttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgt |
303 |
Q |
| |
|
||||||||| || | ||||| ||||| | ||| ||||||||||| |||||||| |
|
|
| T |
13228586 |
cttgtgtgaatcaacgcattgcagaaagagcaatcacacaagtgaaaatgatgt |
13228533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 42757638 - 42757706
Alignment:
| Q |
113 |
cacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcac |
185 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
42757638 |
cacaattgacacattaacatctctctattaa----gagactctccgtgtctgtgatccaccaccaagaagcac |
42757706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 304
Target Start/End: Complemental strand, 281814 - 281775
Alignment:
| Q |
265 |
acattgtagaaaaaacaaccacacaagtgagaatgatgtc |
304 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
281814 |
acattgcagaaaaaacaaccacacaagtgagaatgatgtc |
281775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 303
Target Start/End: Complemental strand, 50814725 - 50814634
Alignment:
| Q |
213 |
atatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgt |
303 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| |||| ||||||||| |||| |||||| | ||| | ||| ||||| ||||| |||||||| |
|
|
| T |
50814725 |
atatgatatcaccattgggacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatgt |
50814634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 8e-92; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 7 - 304
Target Start/End: Original strand, 21588784 - 21589082
Alignment:
| Q |
7 |
tgagatggacatcaaagttacatccataatcttatgacattacaagtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttatt |
106 |
Q |
| |
|
|||||| ||||||| |||||||| || ||||||| || |||| |||||||||||| |||| || |||||||||||||||||| |||||||||||||||| |
|
|
| T |
21588784 |
tgagattgacatcacagttacattcaaaatcttaagagattatgagtcatctcactgatatgttattcaatatctattatatgacattcaatgtgttatt |
21588883 |
T |
|
| Q |
107 |
ttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttg |
206 |
Q |
| |
|
|||| |||| ||||||||||| ||||||||||||||| | || |||||||||||| |||||||||||||||||||||| ||||||||| || ||||| |
|
|
| T |
21588884 |
ttaacccacccttgacacattaccatctctcaattaaatacgatactcttcgtgtccacgatccaccaccacgaagcactttcgctccccataattgttg |
21588983 |
T |
|
| Q |
207 |
aagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgtc |
304 |
Q |
| |
|
||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
21588984 |
aagcgtatatgatatcaccattggaacttacgggggagacaacacttgtgtgattcgacacattgcagaaaaaacaaccacacaggtgagaatgatgtc |
21589082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 90 - 303
Target Start/End: Complemental strand, 13756590 - 13756376
Alignment:
| Q |
90 |
gcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttcc |
189 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||| ||| ||||| |||||||||||| || ||| ||||||||||||| | ||||||| |
|
|
| T |
13756590 |
gcattcaatgtgttattttaactcacacttgacacattaacatatctatattaagcatgagactctttgtatctactatccaccaccacggaccacttcc |
13756491 |
T |
|
| Q |
190 |
gctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacac |
288 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||| | || || |||| ||||||||| |||| |||||| ||||| | ||| ||||| |
|
|
| T |
13756490 |
gctccccaaaaatgttgaagcagatatgatatcaccattgggacttatgtggaagccaacgcttgtgtgaatcgacacattgcagaaagagcaatcacac |
13756391 |
T |
|
| Q |
289 |
aagtgagaatgatgt |
303 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
13756390 |
aagtgataatgatgt |
13756376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 90 - 304
Target Start/End: Original strand, 42797318 - 42797532
Alignment:
| Q |
90 |
gcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttcc |
189 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||| || ||||| ||||||||||| || |||| |||||||||||| | ||||||| |
|
|
| T |
42797318 |
gcattcaatgtgttattttaactcacacttgacacattaacatctttctattaagcatgagactctctgtatctgctatccaccaccacagaccacttcc |
42797417 |
T |
|
| Q |
190 |
gctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacac |
288 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||| ||||||| | |||| ||||||||||||| |||| |||||| ||||| | ||| ||||| |
|
|
| T |
42797418 |
gctccccaaaaatgttgaagcagatatgatatcaccattgagacttac-gaggagcaaacacttgtgtgaatcgacacattgcagaaagagcaatcacac |
42797516 |
T |
|
| Q |
289 |
aagtgagaatgatgtc |
304 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
42797517 |
gagtgataatgatgtc |
42797532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 90 - 303
Target Start/End: Original strand, 23141828 - 23142042
Alignment:
| Q |
90 |
gcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttcc |
189 |
Q |
| |
|
||||||||||||||||||||| || | ||||||| |||||||||||| ||||| ||||||||||| || |||| ||||||||||||| | ||||||| |
|
|
| T |
23141828 |
gcattcaatgtgttattttaactcatacttgacacgttaacatctctctattaagcatgagactctctgtatctgctatccaccaccacggaccacttcc |
23141927 |
T |
|
| Q |
190 |
gctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacac |
288 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||| ||| |||||| ||||||| |||| ||||||||| |||| |||||| | ||| | ||| ||||| |
|
|
| T |
23141928 |
gctccccgaaaatgttgaagcagatatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacac |
23142027 |
T |
|
| Q |
289 |
aagtgagaatgatgt |
303 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
23142028 |
gagtgataatgatgt |
23142042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 10901475 - 10901546
Alignment:
| Q |
90 |
gcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgt |
161 |
Q |
| |
|
||||||||||||||||||||| |||| |||| ||||||||||||||| ||||| | |||||||| ||||| |
|
|
| T |
10901475 |
gcattcaatgtgttattttaactcacatttgatacattaacatctctccattaagtacgagactctccgtgt |
10901546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 7 - 304
Target Start/End: Complemental strand, 36096247 - 36095949
Alignment:
| Q |
7 |
tgagatggacatcaaagttacatccataatcttatgacattacaagtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttatt |
106 |
Q |
| |
|
|||||| |||||| |||||||| || ||||||| || |||| |||||||||| | |||| || ||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
36096247 |
tgagattgacatcgcagttacattcaaaatcttaagagattatgagtcatctcattgatatgttattcaatatcaattatatggcattcaatgtattatt |
36096148 |
T |
|
| Q |
107 |
ttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttg |
206 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||||||||| | || |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36096147 |
ttaacccacacttgacacattacaatctctcaattaaatacgatactcttcgtgtccgcgatccaccaccacgaagcacttccgctccccaaaaatgttg |
36096048 |
T |
|
| Q |
207 |
aagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgtc |
304 |
Q |
| |
|
||| ||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| |||||| |||||||||||||||| | |||||||||||||| |
|
|
| T |
36096047 |
aagcgtatatgatatcaccattgggacatacgggggatacaacacttgtgtgattcgacacattgcagaaaaaacaaccacaaaggtgagaatgatgtc |
36095949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 166 - 304
Target Start/End: Original strand, 12746103 - 12746241
Alignment:
| Q |
166 |
gatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga- |
264 |
Q |
| |
|
||||||||||||| ||||| |||||||| ||||||||||||||| ||||||||||||||| |||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
12746103 |
gatccaccaccacaaagcatttccgctctccaaaaatgttgaagcgtatatgatatcaccattgggaattacaggggagacaacacttgtgtgattcgat |
12746202 |
T |
|
| Q |
265 |
acattgtagaaaaaacaaccacacaagtgagaatgatgtc |
304 |
Q |
| |
|
|||||| || | || ||| ||||||||||||||||||||| |
|
|
| T |
12746203 |
acattgcag-agaagcaatcacacaagtgagaatgatgtc |
12746241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 155
Target Start/End: Original strand, 50331954 - 50332056
Alignment:
| Q |
51 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgag |
150 |
Q |
| |
|
||||||||||||||||| || |||| ||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
50331954 |
agtcatctcacttatatgtttctcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctctctattaagcatgaa |
50332051 |
T |
|
| Q |
151 |
actct |
155 |
Q |
| |
|
||||| |
|
|
| T |
50332052 |
actct |
50332056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 303
Target Start/End: Original strand, 50332063 - 50332173
Alignment:
| Q |
194 |
cccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcg-aacattgtagaaaaaacaaccacacaagt |
292 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||| ||||||| |||| ||||||||| ||| |||||| ||||| | ||| ||||| ||| |
|
|
| T |
50332063 |
cccaaaaatgttgaagcagatatgatatcaccattgggacttatgggggagccaacgcttgtgtgaatcgtcacattgcagaaagagcaatcacacgagt |
50332162 |
T |
|
| Q |
293 |
gagaatgatgt |
303 |
Q |
| |
|
|| |||||||| |
|
|
| T |
50332163 |
gataatgatgt |
50332173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 51 - 303
Target Start/End: Original strand, 33240 - 33492
Alignment:
| Q |
51 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgag |
150 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
33240 |
agtcatctcacttatatgttgttcaacatctactatt--gcattcaatgtgttattttaactcacatttgacacattaacatctcttcattaagtatgag |
33337 |
T |
|
| Q |
151 |
actcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaaca |
250 |
Q |
| |
|
||||| ||||||| |||||||||||||||| |||||||||| |||||||||||||||| | |||||||||| | ||| |||||| |||||| ||||| |
|
|
| T |
33338 |
actctctgtgtctgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcgggtatgatatcaacattgagactta-tggggagccaaca |
33436 |
T |
|
| Q |
251 |
cttgtgtgatt--cga-acattgtagaaaaaacaaccacacaagtgagaatgatgt |
303 |
Q |
| |
|
||||||||| | || |||||| ||||| | ||| |||||||||||||||||||| |
|
|
| T |
33437 |
cttgtgtgaatgatgacacattgcagaaagagcaatcacacaagtgagaatgatgt |
33492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 51 - 303
Target Start/End: Original strand, 5788867 - 5789119
Alignment:
| Q |
51 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgag |
150 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
5788867 |
agtcatctcacttatatgttgttcaacatctactatt--gcattcaatgtgttattttaactcacatttgacacattaacatctcttcattaagtatgag |
5788964 |
T |
|
| Q |
151 |
actcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaaca |
250 |
Q |
| |
|
||||| ||||||| |||||||||||||||| |||||||||| |||||||||||||||| | |||||||||| | ||| |||||| |||||| ||||| |
|
|
| T |
5788965 |
actctctgtgtctgcgatccaccaccacgaaccacttccgcttcccaaaaatgttgaagcgggtatgatatcaacattgagactta-tggggagccaaca |
5789063 |
T |
|
| Q |
251 |
cttgtgtgatt--cga-acattgtagaaaaaacaaccacacaagtgagaatgatgt |
303 |
Q |
| |
|
||||||||| | || |||||| ||||| | ||| |||||||||||||||||||| |
|
|
| T |
5789064 |
cttgtgtgaatgatgacacattgcagaaagagcaatcacacaagtgagaatgatgt |
5789119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 51 - 303
Target Start/End: Original strand, 3395448 - 3395698
Alignment:
| Q |
51 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgag |
150 |
Q |
| |
|
||||||||||||||||| || |||| ||||| ||| |||||||| |||||||||||| |||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
3395448 |
agtcatctcacttatatgtttctcaacatctactatt--gcattcaaagtgttattttaactcacacctgacacattaacatctctccattaagtatgag |
3395545 |
T |
|
| Q |
151 |
actcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaaca |
250 |
Q |
| |
|
|||||| ||||||| |||||||||||| || ||||| |||||||||||||||||||| | ||||||||||||| |||| ||||| |||||||||||| |
|
|
| T |
3395546 |
actctttgtgtctgcgatccaccaccaaaaaccacttatgctccccaaaaatgttgaagcggatatgatatcaccattggaactta-tggggagacaaca |
3395644 |
T |
|
| Q |
251 |
cttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgt |
303 |
Q |
| |
|
||||||||| |||| || ||| ||||| | ||| ||||||||||| |||||||| |
|
|
| T |
3395645 |
cttgtgtgaatcgacacgttgcagaaagagcaatcacacaagtgaaaatgatgt |
3395698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 303
Target Start/End: Original strand, 41754529 - 41754620
Alignment:
| Q |
213 |
atatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgt |
303 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| |||| ||||||||| |||| |||||| | ||| | ||| ||||| ||||| |||||||| |
|
|
| T |
41754529 |
atatgatatcaccattgggacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatgt |
41754620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 51 - 276
Target Start/End: Complemental strand, 1599773 - 1599549
Alignment:
| Q |
51 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgag |
150 |
Q |
| |
|
||||||||||||||||| || |||| ||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||||| ||||| |||||| |
|
|
| T |
1599773 |
agtcatctcacttatatgtttctcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctctctattaagcatgag |
1599676 |
T |
|
| Q |
151 |
actcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaaca |
250 |
Q |
| |
|
||||| || |||| |||||||||||| | ||||||||||||| ||||||||||||| |||||||||||||| |||||||||| ||||||| ||| | |
|
|
| T |
1599675 |
actctctgtatctgctatccaccaccacataccacttccgctcccaaaaaatgttgaagcatatatgatatcacctttgggacttatgggggagccaata |
1599576 |
T |
|
| Q |
251 |
cttgtgtgattcga-acattgtagaaa |
276 |
Q |
| |
|
||||||||| |||| |||||| ||||| |
|
|
| T |
1599575 |
cttgtgtgaatcgacacattgcagaaa |
1599549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 90 - 259
Target Start/End: Complemental strand, 26894957 - 26894788
Alignment:
| Q |
90 |
gcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttcc |
189 |
Q |
| |
|
|||| |||||||||||||||| |||| |||| | ||||||||||||| ||||| |||||||| | |||||||| ||||||||||| ||| ||||||| |
|
|
| T |
26894957 |
gcatccaatgtgttattttaaatcacacttgatatattaacatctctccattaagtatgagactatccgtgtctgcaatccaccaccatgaaccacttcc |
26894858 |
T |
|
| Q |
190 |
gctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtga |
259 |
Q |
| |
|
|||||| |||||||||||||| |||| |||||| |||||||||| |||| || ||||| |||||||| |
|
|
| T |
26894857 |
actcccctaaaatgttgaagtggatattatatcattattgggacttatggggtagccaacagttgtgtga |
26894788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 183 - 304
Target Start/End: Original strand, 33014000 - 33014122
Alignment:
| Q |
183 |
cacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaaca |
281 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
33014000 |
cacttccgctccccaaaaatgttgaagcgtatatgatatcaccattgggacttacatgggagacaacacttgtgtgattcgacacattgcagaaaaaaca |
33014099 |
T |
|
| Q |
282 |
accacacaagtgagaatgatgtc |
304 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33014100 |
accacacaagtgagaatgatgtc |
33014122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 51 - 303
Target Start/End: Original strand, 38015928 - 38016177
Alignment:
| Q |
51 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgag |
150 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||||| || || ||||| |
|
|
| T |
38015928 |
agtcatctcacttatatgttgctcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctctccatcaagtatgag |
38016025 |
T |
|
| Q |
151 |
actcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaaca |
250 |
Q |
| |
|
||| || ||||| |||||||||||||||| |||||||| ||| |||||||||||||| | |||||||||| || |||||||||| |||||| || || |
|
|
| T |
38016026 |
actttt-gtgtccacgatccaccaccacgaaccacttccgttccacaaaaatgttgaagcggatatgatatcgccattgggactta-tggggagccagca |
38016123 |
T |
|
| Q |
251 |
cttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgt |
303 |
Q |
| |
|
||||||||| |||| | |||| ||||| | ||| ||||||||| | |||||||| |
|
|
| T |
38016124 |
cttgtgtgaatcgatatattgcagaaagagcaatcacacaagtaataatgatgt |
38016177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 33013852 - 33013989
Alignment:
| Q |
7 |
tgagatggacatcaaagttacatccataatcttatgacattacaagtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttatt |
106 |
Q |
| |
|
|||||| ||||||| | ||||||||| ||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
33013852 |
tgagattgacatcacaattacatccaagttcttaagacattatgagtcatctcactaatatgttgttcaatatatattatatgaaattcaatgtgttatt |
33013951 |
T |
|
| Q |
107 |
ttaatccacagttgacacattaacatctctcaattaaa |
144 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
33013952 |
ttaacccacacttgacacattagcatctctcaattaaa |
33013989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 90 - 303
Target Start/End: Original strand, 43387132 - 43387344
Alignment:
| Q |
90 |
gcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttcc |
189 |
Q |
| |
|
||||||||||||| ||||||| |||| |||||||||||||||||||| |||| | |||||||| |||||||| |||||| ||||||||| ||||| |
|
|
| T |
43387132 |
gcattcaatgtgtaattttaactcacacttgacacattaacatctctctgttaagtacgagactctccgtgtctgcgatcca-caccacgaaccactttt |
43387230 |
T |
|
| Q |
190 |
gctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacac |
288 |
Q |
| |
|
|||||| |||||||||||| | ||||||||||||| |||||||||| ||||| |||||||||||||| | || ||| |||||||||| ||| ||||| |
|
|
| T |
43387231 |
gctcccaaaaaatgttgaaacggatatgatatcaccattgggactta-tggggatccaacacttgtgtgaattgacacaatgtagaaaaagcaatcacac |
43387329 |
T |
|
| Q |
289 |
aagtgagaatgatgt |
303 |
Q |
| |
|
|||||| ||| |||| |
|
|
| T |
43387330 |
aagtgaaaataatgt |
43387344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 167 - 296
Target Start/End: Complemental strand, 14503 - 14373
Alignment:
| Q |
167 |
atccaccaccacgaagcacttccgctccccaaaaatgttgaagtgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcga-a |
265 |
Q |
| |
|
|||||||| |||||| ||| |||||||| |||||||||||||| | ||||||||||||| || |||||| || |||| |||||||||||||| || | | |
|
|
| T |
14503 |
atccaccatcacgaaccacatccgctcctcaaaaatgttgaagcggatatgatatcaccattaagacttatggaggagccaacacttgtgtgaatcaaca |
14404 |
T |
|
| Q |
266 |
cattgtagaaaaaacaaccacacaagtgaga |
296 |
Q |
| |
|
||||| ||||| ||| ||||||||||||| |
|
|
| T |
14403 |
cattgaagaaagggcaatcacacaagtgaga |
14373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 14595 - 14538
Alignment:
| Q |
51 |
agtcatctcacttatatattgttcaatatctattatatggcattcaatgtgttattttaa |
110 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
14595 |
agtcatctcatttatatgttgttcaacatctactatt--gcattcaatgtgttattttaa |
14538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 223
Target Start/End: Original strand, 50251 - 50384
Alignment:
| Q |
90 |
gcattcaatgtgttattttaatccacagttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttcc |
189 |
Q |
| |
|
|||||||| |||||||||||| ||| |||||| ||||| |||||| ||||| | |||||||| |||| | |||||||||| ||||| |||||| |
|
|
| T |
50251 |
gcattcaacgtgttattttaactgacacttgacatattaaattctctccattaagtacgagactctctatgtccgcgatccaccactacgaaccacttct |
50350 |
T |
|
| Q |
190 |
gctccccaaaaatgttgaagtgtatatgatatca |
223 |
Q |
| |
|
|||||| ||||| ||||||| | ||||||||||| |
|
|
| T |
50351 |
gctcccaaaaaacgttgaagcggatatgatatca |
50384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 17510279 - 17510369
Alignment:
| Q |
118 |
ttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaa |
208 |
Q |
| |
|
|||||||||||||||||||| | ||| | |||||||| ||| |||||||| ||||||| ||| |||| || |||||| ||||||||||| |
|
|
| T |
17510279 |
ttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgaccaccaagaaccactcccactcccctaaaatgttgaa |
17510369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 17542935 - 17542845
Alignment:
| Q |
118 |
ttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaa |
208 |
Q |
| |
|
|||||||||||||||||||| | ||| | |||||||| ||| |||||||| ||||||| ||| |||| || |||||| ||||||||||| |
|
|
| T |
17542935 |
ttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgaccaccaagaaccactcccactcccctaaaatgttgaa |
17542845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 17474795 - 17474885
Alignment:
| Q |
118 |
ttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaa |
208 |
Q |
| |
|
|||||||||||||||||||| | ||| | |||||||| ||| |||||||| ||||||| ||| |||| || | |||| ||||||||||| |
|
|
| T |
17474795 |
ttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgaccaccaagaaccactcccacacccctaaaatgttgaa |
17474885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 17578419 - 17578329
Alignment:
| Q |
118 |
ttgacacattaacatctctcaattaaacatgagactcttcgtgtctgtgatccaccaccacgaagcacttccgctccccaaaaatgttgaa |
208 |
Q |
| |
|
|||||||||||||||||||| | ||| | |||||||| ||| |||||||| ||||||| ||| |||| || | |||| ||||||||||| |
|
|
| T |
17578419 |
ttgacacattaacatctctccagtaagtgtcagactctttgtgcctgtgatcgaccaccaagaaccactcccacacccctaaaatgttgaa |
17578329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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