View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_87 (Length: 315)

Name: NF6865A_low_87
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_87
NF6865A_low_87
[»] chr6 (9 HSPs)
chr6 (1-261)||(7428422-7428682)
chr6 (1-261)||(16279017-16279277)
chr6 (1-261)||(28365614-28365874)
chr6 (31-261)||(26597535-26597764)
chr6 (120-205)||(1599690-1599776)
chr6 (106-166)||(27436851-27436911)
chr6 (52-242)||(29214239-29214429)
chr6 (125-218)||(24175021-24175115)
chr6 (124-244)||(34515102-34515224)
[»] chr1 (14 HSPs)
chr1 (1-261)||(40946408-40946668)
chr1 (1-261)||(20306670-20306930)
chr1 (1-261)||(1992311-1992571)
chr1 (1-261)||(30001679-30001939)
chr1 (73-173)||(8313415-8313515)
chr1 (120-208)||(43387089-43387178)
chr1 (17-173)||(16851869-16852023)
chr1 (122-215)||(47783156-47783250)
chr1 (111-154)||(22636363-22636406)
chr1 (120-150)||(3982730-3982760)
chr1 (120-197)||(26531814-26531892)
chr1 (183-261)||(27341560-27341638)
chr1 (124-216)||(16852896-16852989)
chr1 (120-161)||(19102764-19102805)
[»] chr3 (18 HSPs)
chr3 (1-261)||(20934934-20935194)
chr3 (1-261)||(32976408-32976668)
chr3 (1-261)||(42400320-42400560)
chr3 (32-261)||(17764041-17764270)
chr3 (32-261)||(19065361-19065590)
chr3 (31-255)||(10976409-10976634)
chr3 (124-212)||(50241485-50241574)
chr3 (259-315)||(20934480-20934536)
chr3 (120-205)||(50331951-50332037)
chr3 (122-208)||(14044290-14044377)
chr3 (120-199)||(14045390-14045470)
chr3 (120-161)||(2250976-2251017)
chr3 (107-154)||(12125608-12125655)
chr3 (112-153)||(431968-432009)
chr3 (120-161)||(20790313-20790354)
chr3 (120-244)||(40416294-40416419)
chr3 (113-173)||(9261465-9261525)
chr3 (106-150)||(11655434-11655478)
[»] chr2 (14 HSPs)
chr2 (1-261)||(19040586-19040846)
chr2 (1-261)||(39839025-39839285)
chr2 (136-239)||(19994387-19994490)
chr2 (114-244)||(36720068-36720199)
chr2 (111-208)||(3395442-3395540)
chr2 (111-207)||(5788862-5788959)
chr2 (123-216)||(29977342-29977436)
chr2 (107-173)||(36729301-36729367)
chr2 (122-161)||(14905103-14905142)
chr2 (107-153)||(2592997-2593043)
chr2 (124-216)||(14872727-14872820)
chr2 (124-240)||(38796797-38796914)
chr2 (113-173)||(14868824-14868884)
chr2 (106-142)||(19994496-19994532)
[»] scaffold1750 (1 HSPs)
scaffold1750 (1-261)||(221-481)
[»] chr7 (11 HSPs)
chr7 (1-255)||(43989571-43989825)
chr7 (73-180)||(38788960-38789067)
chr7 (54-154)||(4120049-4120149)
chr7 (111-154)||(45406696-45406739)
chr7 (124-209)||(6677121-6677207)
chr7 (96-150)||(17474783-17474837)
chr7 (96-150)||(17510267-17510321)
chr7 (96-150)||(17542893-17542947)
chr7 (96-150)||(17578377-17578431)
chr7 (139-176)||(22528932-22528969)
chr7 (120-176)||(2452121-2452177)
[»] scaffold1345 (1 HSPs)
scaffold1345 (1-261)||(1737-1995)
[»] scaffold0021 (1 HSPs)
scaffold0021 (61-255)||(128999-129191)
[»] scaffold2098 (1 HSPs)
scaffold2098 (61-255)||(221-415)
[»] chr4 (14 HSPs)
chr4 (111-208)||(13228691-13228789)
chr4 (73-173)||(28475659-28475759)
chr4 (120-212)||(6554542-6554635)
chr4 (268-315)||(35648825-35648872)
chr4 (106-176)||(11559503-11559573)
chr4 (107-173)||(50158183-50158249)
chr4 (113-173)||(24183450-24183510)
chr4 (120-212)||(314324-314417)
chr4 (121-215)||(8057676-8057770)
chr4 (125-218)||(42729453-42729545)
chr4 (183-261)||(13240688-13240766)
chr4 (109-178)||(11560207-11560276)
chr4 (124-216)||(24182482-24182575)
chr4 (120-152)||(281928-281960)
[»] chr5 (6 HSPs)
chr5 (111-208)||(38015922-38016020)
chr5 (120-212)||(9024953-9025046)
chr5 (105-156)||(24539577-24539628)
chr5 (109-154)||(9012759-9012804)
chr5 (120-161)||(23570629-23570670)
chr5 (120-161)||(30327042-30327083)
[»] scaffold0159 (1 HSPs)
scaffold0159 (111-207)||(33235-33332)
[»] scaffold0191 (1 HSPs)
scaffold0191 (73-173)||(5115-5215)
[»] chr8 (18 HSPs)
chr8 (122-205)||(42797278-42797362)
chr8 (124-205)||(13756548-13756630)
chr8 (120-212)||(41527022-41527115)
chr8 (126-178)||(17871244-17871296)
chr8 (120-156)||(38290542-38290578)
chr8 (189-232)||(14373959-14374002)
chr8 (111-173)||(10901468-10901530)
chr8 (120-205)||(23141788-23141874)
chr8 (120-161)||(361048-361089)
chr8 (124-216)||(15276802-15276895)
chr8 (124-216)||(15457171-15457264)
chr8 (109-150)||(23686609-23686650)
chr8 (109-153)||(5685877-5685921)
chr8 (111-155)||(8357690-8357734)
chr8 (113-173)||(15277767-15277827)
chr8 (113-173)||(15458136-15458196)
chr8 (111-155)||(25087451-25087495)
chr8 (129-161)||(45245323-45245355)
[»] scaffold0114 (1 HSPs)
scaffold0114 (120-212)||(37041-37134)
[»] scaffold0003 (1 HSPs)
scaffold0003 (106-166)||(50451-50511)
[»] scaffold0377 (1 HSPs)
scaffold0377 (109-200)||(12554-12648)
[»] scaffold0169 (1 HSPs)
scaffold0169 (112-153)||(2278-2319)
[»] scaffold0155 (1 HSPs)
scaffold0155 (108-148)||(22626-22666)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 7428682 - 7428422
Alignment:
Q  1 tcagtttaagcttccacagaaagcccagcggtggtatcacatctcggttagacattgtgagggagcgagagttgttcttggtggtggactacgaacacaa 100  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7428682 tcagtttaagcttccacagaaagctcagctgtggtatcacatctccgttagacattgtgagggagcgagagttgttcttggtggtggactacaaacacaa 7428583  T
Q  101 agatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatatgataaacatttaagtgagatga 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  7428582 agatcctgacacttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagatatgagaaacatttaagtgagatga 7428483  T
Q  201 ctcatatacataatgttttcagactttgaaagaagatgtgatgtgaatttcacttctgtga 261  Q
    |||| |||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||    
T  7428482 ctcacatacataatgctttcagactttgaaagaatatgtgatgtgaatctcacttctgtga 7428422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 16279277 - 16279017
Alignment:
Q  1 tcagtttaagcttccacagaaagcccagcggtggtatcacatctcggttagacattgtgagggagcgagagttgttcttggtggtggactacgaacacaa 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16279277 tcagtttaagcttccacagaaagctcagttgtggtatcacatctccgttagacattgtgagggagcgagagttgttcttggtggtggactacaaacacaa 16279178  T
Q  101 agatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatatgataaacatttaagtgagatga 200  Q
    |||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  16279177 agatcctgacacttaatggacagatgttaatgtgtcaagtgtaagttaaaattttatattgtatgcaatagtagatatgagaaacatttaagtgagatga 16279078  T
Q  201 ctcatatacataatgttttcagactttgaaagaagatgtgatgtgaatttcacttctgtga 261  Q
    |||| || ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||    
T  16279077 ctcacatgcataatgctttcagactttgaaagaatatgtgatgtgaatctcacttctgtga 16279017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 28365614 - 28365874
Alignment:
Q  1 tcagtttaagcttccacagaaagcccagcggtggtatcacatctcggttagacattgtgagggagcgagagttgttcttggtggtggactacgaacacaa 100  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28365614 tcagtttaagcttccacagaaagctcagctgtggtatcacatctccgttagacattgtgagggagcgagagttgttcttggtggtggactacaaacacaa 28365713  T
Q  101 agatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatatgataaacatttaagtgagatga 200  Q
    |||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  28365714 agatcctgacacttaatggacagatgttaatgtgtcaagtgtaagttaaaattttatattgtatgcaatagtatatatgagaaacatttaagtgagatga 28365813  T
Q  201 ctcatatacataatgttttcagactttgaaagaagatgtgatgtgaatttcacttctgtga 261  Q
     ||| || ||||||| ||| |||||||||||||| ||||||||||||| ||||||||||||    
T  28365814 ttcacatgcataatgcttttagactttgaaagaatatgtgatgtgaatctcacttctgtga 28365874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 261
Target Start/End: Complemental strand, 26597764 - 26597535
Alignment:
Q  31 gtggtatcacatctcggttagacattgtgagggagcgagagttgttcttggtggtggactacgaacacaaagatcctgacacttaatgcagagatgttaa 130  Q
    |||||||||||||| ||||  | |||||  |||||||  ||| |||||||||| || |  ||| |||   |||||||||||||||||| |||||||||||    
T  26597764 gtggtatcacatcttggttcaatattgtaggggagcggaagtggttcttggtgatgaatgacggacatggagatcctgacacttaatggagagatgttaa 26597665  T
Q  131 tgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatatgataaacatttaagtgagatgactcatatacataatgttttcagactttgaa 230  Q
    | ||||||||||||| ||||||| || |||||| |||| |||| || | |  ||||| ||| |||||| |||||||||||||||   || ||||||||||    
T  26597664 tatgtcaagtgtgagctaaaattctacattgtaagcaaaagtatatgtca-gaacatataaatgagattactcatatacataataccttaagactttgaa 26597566  T
Q  231 agaagatgtgatgtgaatttcacttctgtga 261  Q
    |||| || |||| ||||| |||||| |||||    
T  26597565 agaatatatgatatgaatctcacttgtgtga 26597535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 1599690 - 1599776
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaat-atgataaacatttaagtgagatgactcat 205  Q
    |||||||||||||||||||||||||||||||||   | |||| ||||||||||| ||  ||| |||||| |||||||||||||||||    
T  1599690 agagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgagatgactcat 1599776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 27436911 - 27436851
Alignment:
Q  106 ctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgc 166  Q
    |||| |||||||| |||||||| ||||||||||||| |||||||| || ||||||| ||||    
T  27436911 ctgaaacttaatgtagagatgtcaatgtgtcaagtgcgagttaaagttctatattggatgc 27436851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 242
Target Start/End: Complemental strand, 29214429 - 29214239
Alignment:
Q  52 acattgtgagggagcgagagttgttcttggtggtggactacgaacacaaagatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaa 151  Q
    |||||||| ||||||| |||| |||||||||||||||  ||  ||||  ||| | | |||||||||| ||| ||||||| | || |||| | ||||||||    
T  29214429 acattgtgggggagcg-gagtggttcttggtggtggatcacccacacggagagcatcacacttaatgaagatatgttaacgagttaagtttaagttaaaa 29214331  T
Q  152 ttttatattgtatgcaatagtaaatat-gataaacatttaagtgagatgactcatatacataatgttttcagactttgaaagaagatgtgat 242  Q
    ||  | |||||||| || || || | | ||  |||||  |||||||||||||||||||| || ||| || |||||||| | |||||||||||    
T  29214330 ttccacattgtatgaaaaagcaattgttgaacaacatacaagtgagatgactcatatacctattgtcttaagactttggatgaagatgtgat 29214239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 24175021 - 24175115
Alignment:
Q  125 tgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaat-atgataaacatttaagtgagatgactcatatacataatgttt 218  Q
    |||||||||||||||||||| ||||||||   || ||||||||||| || ||  |||  ||||| ||||||||||||| | ||||| ||||||||    
T  24175021 tgttaatgtgtcaagtgtgaattaaaattcagtaatgtatgcaataatatatgttgagcaacatataagtgagatgacccttatacctaatgttt 24175115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 244
Target Start/End: Complemental strand, 34515224 - 34515102
Alignment:
Q  124 atgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaata-tgataaacatttaagtgagatgactcatatacataatgt-tttca 221  Q
    |||||||||||||| |||| ||||||| || || |||| | |||| |||| ||| ||| ||||||  | ||||||||||  ||||||||||||| |||||    
T  34515224 atgttaatgtgtcatgtgtcagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtgagatgaccaatatacataatgtctttca 34515125  T
Q  222 gactttgaaagaagatgtgatgt 244  Q
    |  |||||  |||||||||||||    
T  34515124 ggttttgagtgaagatgtgatgt 34515102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 40946408 - 40946668
Alignment:
Q  1 tcagtttaagcttccacagaaagcccagcggtggtatcacatctcggttagacattgtgagggagcgagagttgttcttggtggtggactacgaacacaa 100  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40946408 tcagtttaagcttccacagaaagctcagctgtggtatcacatctccgttagacattgtgagggagcgagagttgttcttggtggtggactacaaacacaa 40946507  T
Q  101 agatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatatgataaacatttaagtgagatga 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  40946508 agatcctgacacttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagatatgagaaacatttaagtgagatga 40946607  T
Q  201 ctcatatacataatgttttcagactttgaaagaagatgtgatgtgaatttcacttctgtga 261  Q
    |||| |||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||    
T  40946608 ctcacatacataatgctttcagactttgaaagaatatgtgatgtgaatctcacttctgtga 40946668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 20306930 - 20306670
Alignment:
Q  1 tcagtttaagcttccacagaaagcccagcggtggtatcacatctcggttagacattgtgagggagcgagagttgttcttggtggtggactacgaacacaa 100  Q
    |||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||| | ||||||||||||| |||||||    
T  20306930 tcagtttaagattccacagaaagtccagcggtggtattacatctcggttagacattgtgagggagcgagggttgttttgggtggtggactacaaacacaa 20306831  T
Q  101 agatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatatgataaacatttaagtgagatga 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  20306830 agatcctgacacttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagatatgagaaacatttaagtgagatga 20306731  T
Q  201 ctcatatacataatgttttcagactttgaaagaagatgtgatgtgaatttcacttctgtga 261  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||    
T  20306730 ctcatatacataatgctttcagactttgaacgaagatgtgatgtgaatctcacttctgtga 20306670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 1992311 - 1992571
Alignment:
Q  1 tcagtttaagcttccacagaaagcccagcggtggtatcacatctcggttagacattgtgagggagcgagagttgttcttggtggtggactacgaacacaa 100  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  1992311 tcagtttaagcttccacagaaagctcagctgtggtatcacatctccgttagacattgtgagggagcgagagttgttcttggtggtggactaaaaacacaa 1992410  T
Q  101 agatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatatgataaacatttaagtgagatga 200  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||    
T  1992411 agatcctgacacttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagttatgagaaacatttaagtgagatga 1992510  T
Q  201 ctcatatacataatgttttcagactttgaaagaagatgtgatgtgaatttcacttctgtga 261  Q
    |||| |||||||||  |||||||||||||||||| ||||||||||||| ||||||||||||    
T  1992511 ctcacatacataatactttcagactttgaaagaatatgtgatgtgaatctcacttctgtga 1992571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 30001939 - 30001679
Alignment:
Q  1 tcagtttaagcttccacagaaagcccagcggtggtatcacatctcggttagacattgtgagggagcgagagttgttcttggtggtggactacgaacacaa 100  Q
    |||||||||||||||||||||||| | || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30001939 tcagtttaagcttccacagaaagctcggctgtggtatcacatctccgttagacattgtgagggagcgagagttgttcttggtggtggactacaaacacaa 30001840  T
Q  101 agatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatatgataaacatttaagtgagatga 200  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  30001839 agatcctgacacttaatggagagatgttaatgtgtcaagtgtaagttaaaattttatattgtatgcaatagtagatatgagaaacatttaagtgagatga 30001740  T
Q  201 ctcatatacataatgttttcagactttgaaagaagatgtgatgtgaatttcacttctgtga 261  Q
    |||| |||||||||  |||| ||||||||||||| ||||||||||||| ||||||||||||    
T  30001739 ctcacatacataatactttcggactttgaaagaatatgtgatgtgaatctcacttctgtga 30001679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 173
Target Start/End: Complemental strand, 8313515 - 8313415
Alignment:
Q  73 tgttcttggtggtggactacgaacacaaagatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagt 172  Q
    |||||| |||||||||  ||||||||  |||  ||||||||||||| |||||||||||||| | |||||  ||||||||||||| ||||||||||| |||    
T  8313515 tgttctaggtggtggatcacgaacacggagagtctgacacttaatggagagatgttaatgtattaagtgaaagttaaaattttacattgtatgcaagagt 8313416  T
Q  173 a 173  Q
    |    
T  8313415 a 8313415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 43387178 - 43387089
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaat-atgataaacatttaagtgagatgactcatata 208  Q
    ||||||||||||||||||||||||||||||||||  | |||| ||||||||||| ||  ||| |||||| ||||||| ||||||| ||||    
T  43387178 agagatgttaatgtgtcaagtgtgagttaaaattacacattgaatgcaatagtagatgttgagaaacatataagtgaaatgactcgtata 43387089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 16851869 - 16852023
Alignment:
Q  17 cagaaagcccagcggtggtatcacatctcggttagacattgtgagggagcgagagttgttcttggtggtggactacgaacacaaagatcctgacacttaa 116  Q
    ||||||||||| ||||||||| | || | ||||  || || || ||||||| |||| ||| | |||||||||  |||||||| ||||  |||||  ||||    
T  16851869 cagaaagcccaacggtggtatgatattttggttcaacgttttgggggagcgggagt-gttttaggtggtggatcacgaacacgaagagtctgact-ttaa 16851966  T
Q  117 tgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagta 173  Q
    || ||||||||||||||||  ||||| ||||||||||| | ||||||||||| ||||    
T  16851967 tggagagatgttaatgtgttcagtgtaagttaaaatttcacattgtatgcaagagta 16852023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 47783156 - 47783250
Alignment:
Q  122 agatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaat-atgataaacatttaagtgagatgactcatatacataatg 215  Q
    ||||||||||||||||||||||||||||| ||| | ||||  ||||| ||||| |  | |  ||||| ||||||| |||||||||||||||||||    
T  47783156 agatgttaatgtgtcaagtgtgagttaaagtttcacattggctgcaagagtaattgtttaacaacatataagtgatatgactcatatacataatg 47783250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 22636406 - 22636363
Alignment:
Q  111 acttaatgcagagatgttaatgtgtcaagtgtgagttaaaattt 154  Q
    |||||||| |||||||||||| | ||||||||||||||||||||    
T  22636406 acttaatggagagatgttaatttttcaagtgtgagttaaaattt 22636363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 150
Target Start/End: Original strand, 3982730 - 3982760
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaa 150  Q
    |||||||||||||||||||||||||||||||    
T  3982730 agagatgttaatgtgtcaagtgtgagttaaa 3982760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 26531892 - 26531814
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaata-tgataaacatttaagtgaga 197  Q
    |||||||||||| |||||| |||||||| || || || |||| ||| || |||||||| |||||||||| |||||||||    
T  26531892 agagatgttaatttgtcaaatgtgagttgaagttctacattgaatgtaagagtaaatattgataaacatgtaagtgaga 26531814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 27341560 - 27341638
Alignment:
Q  183 aacatttaagtgagatgactcatatacataatgttttcagactttgaaagaagatgtgatgtgaatttcacttctgtga 261  Q
    ||||| |||||||||| |||||||||| |||||  |  ||||||||||| |||||||||| ||||| ||| || |||||    
T  27341560 aacatataagtgagattactcatatacgtaatgcctcaagactttgaaaaaagatgtgatatgaatctcagttgtgtga 27341638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 16852896 - 16852989
Alignment:
Q  124 atgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatat-gataaacatttaagtgagatgactcatatacataatgt 216  Q
    |||||||||||||| |||| ||||||| || || |||| | |||| |||| |||| || ||||||  | ||||||||||| |||||||||||||    
T  16852896 atgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgt 16852989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 19102805 - 19102764
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaaattttatattg 161  Q
    |||| |||||||||||||||| |||||||||| |||||||||    
T  19102805 agaggtgttaatgtgtcaagtatgagttaaaaatttatattg 19102764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 20935194 - 20934934
Alignment:
Q  1 tcagtttaagcttccacagaaagcccagcggtggtatcacatctcggttagacattgtgagggagcgagagttgttcttggtggtggactacgaacacaa 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20935194 tcagttcaagcttccacagaaagcccagcggtggtatcacatctcagttagacattgtgagggagcgagagttgttcttggtggtggacaacgaacacaa 20935095  T
Q  101 agatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatatgataaacatttaagtgagatga 200  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  20935094 agatcctgacacttaatggagagatgttaatgtgtcaggtgtgagttaaaattttatattgtatgcaatagtagatgtgagaaacatttaagtgagatga 20934995  T
Q  201 ctcatatacataatgttttcagactttgaaagaagatgtgatgtgaatttcacttctgtga 261  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||| |||||| |||||    
T  20934994 ctcatatacataatgctttcggactttgaaagaagatgtgatgtgaatctcacttatgtga 20934934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 32976668 - 32976408
Alignment:
Q  1 tcagtttaagcttccacagaaagcccagcggtggtatcacatctcggttagacattgtgagggagcgagagttgttcttggtggtggactacgaacacaa 100  Q
    |||||||||| ||||||| |||| ||||||||||||| | ||||||||||||||||||||||||||||| |||||| | ||||||||||||| |||||||    
T  32976668 tcagtttaagattccacataaagtccagcggtggtattatatctcggttagacattgtgagggagcgagggttgttttgggtggtggactacaaacacaa 32976569  T
Q  101 agatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatatgataaacatttaagtgagatga 200  Q
    ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  32976568 agatcctaacacttaatggagagatgttaatgtatcaagtgtgagttaaaattttatattgtatgcaatagtagatatgagaaacatttaagtgagatga 32976469  T
Q  201 ctcatatacataatgttttcagactttgaaagaagatgtgatgtgaatttcacttctgtga 261  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  32976468 ctcatatacataatgctttcagactttgaaagaagatgtgatgtgaatctcacttctgtga 32976408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 42400560 - 42400320
Alignment:
Q  1 tcagtttaagcttccacagaaagcccagcggtggtatcacatctcggttagacattgtgagggagcgagagttgttcttggtggtggactacgaacacaa 100  Q
    |||||||||| ||||||||||||| |||| ||||||||||||||| |||||||||| |||||||||||||||                    ||||||||    
T  42400560 tcagtttaagtttccacagaaagctcagctgtggtatcacatctccgttagacattttgagggagcgagagt--------------------gaacacaa 42400481  T
Q  101 agatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatatgataaacatttaagtgagatga 200  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  42400480 agatcctgacacttaatggagagatgttaatgtgtcacgtgtgagttaaaattttatattgtatgcaatagtagatatgagaaacatttaagtgagatga 42400381  T
Q  201 ctcatatacataatgttttcagactttgaaagaagatgtgatgtgaatttcacttctgtga 261  Q
    |||| |||||||||| |||||||||||||||||| ||||||||||||| |||||| |||||    
T  42400380 ctcacatacataatgctttcagactttgaaagaatatgtgatgtgaatctcacttatgtga 42400320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 32 - 261
Target Start/End: Original strand, 17764041 - 17764270
Alignment:
Q  32 tggtatcacatctcggttagacattgtgagggagcgagagttgttcttggtggtggactacgaacacaaagatcctgacacttaatgcagagatgttaat 131  Q
    |||||||||||| |||||  | ||||||  ||| || |||| ||||||||| | |||  ||||||||  || |||||| |||||||| ||||||||||||    
T  17764041 tggtatcacatcccggtttaatattgtggaggaacgggagtggttcttggtaggggatcacgaacacggagttcctgaaacttaatggagagatgttaat 17764140  T
Q  132 gtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatatgataaacatttaagtgagatgactcatatacataatgttttcagactttgaaa 231  Q
    ||| ||||||||||||||||||  | |||||| || | |||| || |||  ||||| |||||||||| |||||||||||||||| ||| |||||||||||    
T  17764141 gtgacaagtgtgagttaaaattccacattgtaagccagagtatatgtgagcaacatataagtgagattactcatatacataatgctttaagactttgaaa 17764240  T
Q  232 gaagatgtgatgtgaatttcacttctgtga 261  Q
    |||||||||| |||||| |||||| |||||    
T  17764241 gaagatgtgacgtgaatctcacttttgtga 17764270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 32 - 261
Target Start/End: Original strand, 19065361 - 19065590
Alignment:
Q  32 tggtatcacatctcggttagacattgtgagggagcgagagttgttcttggtggtggactacgaacacaaagatcctgacacttaatgcagagatgttaat 131  Q
    |||||||||||| |||||  | ||||||  ||| || |||| ||||||||| | |||  ||||||||  || |||||| |||||||| ||||||||||||    
T  19065361 tggtatcacatcccggtttaatattgtggaggaacgggagtggttcttggtaggggatcacgaacacggagttcctgaaacttaatggagagatgttaat 19065460  T
Q  132 gtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatatgataaacatttaagtgagatgactcatatacataatgttttcagactttgaaa 231  Q
    ||| ||||||||||||||||||  | |||||| || | |||| || |||  ||||| |||||||||| |||||||||||||||| ||| |||||||||||    
T  19065461 gtgacaagtgtgagttaaaattccacattgtaagccagagtatatgtgagcaacatataagtgagattactcatatacataatgctttaagactttgaaa 19065560  T
Q  232 gaagatgtgatgtgaatttcacttctgtga 261  Q
    |||||||||| |||||| |||||| |||||    
T  19065561 gaagatgtgacgtgaatctcacttttgtga 19065590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 255
Target Start/End: Complemental strand, 10976634 - 10976409
Alignment:
Q  31 gtggtatcacatctcggttagacattgtgaggg-agcgagagttgttcttggtggtggactacgaacacaaagatcctgacacttaatgcagagatgtta 129  Q
    ||||||||||||| |||||  | |||||| ||| ||||  ||| |||||||| ||||||  ||| |||| |||||| |||||||||||| ||| ||||||    
T  10976634 gtggtatcacatcccggttcaatattgtggggggagcggaagtggttcttggaggtggatcacggacacgaagatcatgacacttaatggagaaatgtta 10976535  T
Q  130 atgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatatgataaacatttaagtgagatgactcatatacataatgttttcagactttga 229  Q
    | |||| ||||||||||| |||||  |||||||| | || ||||||| |||  ||||| |||   |||| ||||||||||||||||  || ||| ||| |    
T  10976534 aagtgtaaagtgtgagtttaaattccatattgtaagaaagagtaaatgtgagcaacatataaaatagattactcatatacataatgccttaagattttca 10976435  T
Q  230 aagaagatgtgatgtgaatttcactt 255  Q
    ||||||||||||  ||||| ||||||    
T  10976434 aagaagatgtgagttgaatctcactt 10976409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 50241485 - 50241574
Alignment:
Q  124 atgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaa-tatgataaacatttaagtgagatgactcatatacata 212  Q
    |||||||||||||||||||||||||||||| |||| || ||  || |||||| |||||  ||||| ||||||||||||||||||||||||    
T  50241485 atgttaatgtgtcaagtgtgagttaaaattctatagtggatataagagtaaattatgaataacatataagtgagatgactcatatacata 50241574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 20934480 - 20934536
Alignment:
Q  259 tgaaaaagaaatttaaacttgagaggaactagaagagaaaataataaggagtttctg 315  Q
    |||||||  |||||||||||||||||||||| |||||||||||||||||||||||||    
T  20934480 tgaaaaatgaatttaaacttgagaggaactaaaagagaaaataataaggagtttctg 20934536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 205
Target Start/End: Complemental strand, 50332037 - 50331951
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaat-atgataaacatttaagtgagatgactcat 205  Q
    |||||||||||||||||||||||||||||||||   | |||| ||||||||||| ||  ||| |||||| |||||||||||||||||    
T  50332037 agagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgagatgactcat 50331951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 14044290 - 14044377
Alignment:
Q  122 agatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaat-atgataaacatttaagtgagatgactcatata 208  Q
    ||||||||||||||||||||||| ||||| ||  |||||| ||||||||||||||  |||  ||||||||||||| ||||| ||||||    
T  14044290 agatgttaatgtgtcaagtgtgatttaaagttccatattggatgcaatagtaaatgttgaacaacatttaagtgatatgacccatata 14044377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 14045390 - 14045470
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagt-aaatatgataaacatttaagtgagatg 199  Q
    |||| |||||||||||| |||||||||||||||||||||||| ||| ||| || |||| |||  ||||| |||||||||||    
T  14045390 agaggtgttaatgtgtcgagtgtgagttaaaattttatattggatggaatggtaaaatttgaacaacatataagtgagatg 14045470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 2250976 - 2251017
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaaattttatattg 161  Q
    ||||||||||||||||||||| |||||||||| |||||||||    
T  2250976 agagatgttaatgtgtcaagtatgagttaaaaatttatattg 2251017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 12125655 - 12125608
Alignment:
Q  107 tgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattt 154  Q
    |||||| ||||||||||||| ||||||||||| || ||||||||||||    
T  12125655 tgacacctaatgcagagatgataatgtgtcaaatgcgagttaaaattt 12125608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 431968 - 432009
Alignment:
Q  112 cttaatgcagagatgttaatgtgtcaagtgtgagttaaaatt 153  Q
    ||||||| |||||| |||||||||||| ||||||||||||||    
T  431968 cttaatggagagatattaatgtgtcaattgtgagttaaaatt 432009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 20790313 - 20790354
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaaattttatattg 161  Q
    |||| |||||||||||||||| |||||||||| |||||||||    
T  20790313 agaggtgttaatgtgtcaagtatgagttaaaaatttatattg 20790354  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 244
Target Start/End: Original strand, 40416294 - 40416419
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaa-tatgataaacatttaagtgagatgactcatatacataatgttt 218  Q
    |||||||||||||||| |||| |||||| |  || || |||| ||| ||||||||| | |||  || ||||||| |||||||| ||||||| |||||| |    
T  40416294 agagatgttaatgtgttaagtatgagttgacgttctacattggatgaaatagtaaagtttgaataatatttaagcgagatgacccatatacctaatgtct 40416393  T
Q  219 tcagactttgaaagaagatgtgatgt 244  Q
    | ||| |||  | |||||||||||||    
T  40416394 taagattttatatgaagatgtgatgt 40416419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 9261465 - 9261525
Alignment:
Q  113 ttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagta 173  Q
    |||||| ||||||||||||||||  ||||| | ||||||||| | ||||||||||| ||||    
T  9261465 ttaatggagagatgttaatgtgttcagtgtaacttaaaatttcacattgtatgcaagagta 9261525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 11655478 - 11655434
Alignment:
Q  106 ctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaa 150  Q
    ||||||||||||| ||||||||||| || |||| |||||||||||    
T  11655478 ctgacacttaatggagagatgttaacgtatcaaatgtgagttaaa 11655434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 19040586 - 19040846
Alignment:
Q  1 tcagtttaagcttccacagaaagcccagcggtggtatcacatctcggttagacattgtgagggagcgagagttgttcttggtggtggactacgaacacaa 100  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  19040586 tcagtttaagcttccacagaaagctcagctgtggtatcacatctccgttagacattgtgagggagcgagagttgttgttggtggtggactacaaacacaa 19040685  T
Q  101 agatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatatgataaacatttaagtgagatga 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  19040686 agatcctgacacttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagatatgagaaacatttaagtgagatga 19040785  T
Q  201 ctcatatacataatgttttcagactttgaaagaagatgtgatgtgaatttcacttctgtga 261  Q
    |||| |||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||    
T  19040786 ctcacatacataatgctttcagactttgaaagaatatgtgatgtgaatctcacttctgtga 19040846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 39839285 - 39839025
Alignment:
Q  1 tcagtttaagcttccacagaaagcccagcggtggtatcacatctcggttagacattgtgagggagcgagagttgttcttggtggtggactacgaacacaa 100  Q
    |||||||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  39839285 tcagtttaagcttccacagaaagctcagttgtggtatcacatctccgttagacattgtgagagagcgagagttgttcttggtggtggactacaaacacaa 39839186  T
Q  101 agatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatatgataaacatttaagtgagatga 200  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  39839185 agatcctgacacttaacggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagatatgagaaacatttaagtgagatga 39839086  T
Q  201 ctcatatacataatgttttcagactttgaaagaagatgtgatgtgaatttcacttctgtga 261  Q
    |||| |||||||||| ||||||||||||||| || ||||||||||||| ||||||||||||    
T  39839085 ctcacatacataatgctttcagactttgaaaaaatatgtgatgtgaatctcacttctgtga 39839025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 136 - 239
Target Start/End: Complemental strand, 19994490 - 19994387
Alignment:
Q  136 caagtgtgagttaaaattttatattgtatgcaatagtaaatatgataaacatttaagtgagatgactcatatacataatgttttcagactttgaaagaag 235  Q
    ||||||||||||||||||| | ||||||||||| |||| || |||  || || ||||||||||||||| |||| | ||||  || |||||||||||||||    
T  19994490 caagtgtgagttaaaatttcaaattgtatgcaagagtagatgtgagcaatatataagtgagatgactcgtatatacaatgccttaagactttgaaagaag 19994391  T
Q  236 atgt 239  Q
    ||||    
T  19994390 atgt 19994387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 114 - 244
Target Start/End: Original strand, 36720068 - 36720199
Alignment:
Q  114 taatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaat-atgataaacatttaagtgagatgactcatatacata 212  Q
    ||||| |||||||||||||||||||||||||||||||||| || | ||| ||||||| || ||  |||  ||||| ||||||||||||  ||||||| ||    
T  36720068 taatgaagagatgttaatgtgtcaagtgtgagttaaaattctacaatgtgtgcaataatatatgttgagcaacatataagtgagatgatccatataccta 36720167  T
Q  213 atgttttcagactttgaaagaagatgtgatgt 244  Q
    |||| |  ||||||||   |||||||||||||    
T  36720168 atgtctgaagactttgggtgaagatgtgatgt 36720199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 3395540 - 3395442
Alignment:
Q  111 acttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaat-atgataaacatttaagtgagatgactcatata 208  Q
    |||||||| |||||||||||||||||| ||||||||||||||   |  ||| ||||||||||| ||  ||| |||||| ||||||||||||||||||||    
T  3395540 acttaatggagagatgttaatgtgtcaggtgtgagttaaaataacactttgaatgcaatagtagatgttgagaaacatataagtgagatgactcatata 3395442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 5788959 - 5788862
Alignment:
Q  111 acttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaat-atgataaacatttaagtgagatgactcatat 207  Q
    |||||||| ||||||||||||||||||| |||||||||||||   | |||| ||||||||||| ||  |||  ||||| |||||||||||||||||||    
T  5788959 acttaatgaagagatgttaatgtgtcaaatgtgagttaaaataacacattgaatgcaatagtagatgttgaacaacatataagtgagatgactcatat 5788862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 29977436 - 29977342
Alignment:
Q  123 gatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaat-atgataaacatttaagtgagatgactcatatacataatgt 216  Q
    |||||||||||||||||||| ||||||| ||  | |||| |||||| |||  ||  |||||||||| ||||||| ||||||||||||| ||||||    
T  29977436 gatgttaatgtgtcaagtgtaagttaaagttccacattgaatgcaagagtggatgttgataaacatataagtgatatgactcatatacctaatgt 29977342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 36729367 - 36729301
Alignment:
Q  107 tgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagta 173  Q
    |||||||| ||| ||| |||||||| |||||||||||||| ||||||| | ||||||||||| ||||    
T  36729367 tgacactttatggagatatgttaatttgtcaagtgtgagtaaaaatttcacattgtatgcaagagta 36729301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 14905103 - 14905142
Alignment:
Q  122 agatgttaatgtgtcaagtgtgagttaaaattttatattg 161  Q
    ||||||| ||||||||||||||||||||| ||||||||||    
T  14905103 agatgttgatgtgtcaagtgtgagttaaagttttatattg 14905142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 2593043 - 2592997
Alignment:
Q  107 tgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaatt 153  Q
    |||||||||||| | |||||||||| |||||||||||||| ||||||    
T  2593043 tgacacttaatggatagatgttaatttgtcaagtgtgagtaaaaatt 2592997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 14872727 - 14872820
Alignment:
Q  124 atgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatat-gataaacatttaagtgagatgactcatatacataatgt 216  Q
    |||||||||||||| |||| ||||||| || || |||| | |||| |||| |||| || ||||||  | ||||||||||| |||||||||||||    
T  14872727 atgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgt 14872820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 38796797 - 38796914
Alignment:
Q  124 atgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatat-gataaacatttaagtgagatgactcatatacataatgttttcag 222  Q
    |||||| |||||||| ||||| ||||||||| |||||| ||| || |||| || | || |||||| ||||||| |||||| ||||   |||||  || ||    
T  38796797 atgttagtgtgtcaactgtgacttaaaatttcatattggatgaaagagtatatgttgagaaacatataagtgaaatgactaatatgtctaatgccttaag 38796896  T
Q  223 actttgaaagaagatgtg 240  Q
    | ||||||||||||||||    
T  38796897 attttgaaagaagatgtg 38796914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 14868824 - 14868884
Alignment:
Q  113 ttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagta 173  Q
    |||||| ||||||||||||||||  ||||| ||||||||||| | |||||| |||| ||||    
T  14868824 ttaatggagagatgttaatgtgttcagtgtaagttaaaatttcacattgtaagcaagagta 14868884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 19994532 - 19994496
Alignment:
Q  106 ctgacacttaatgcagagatgttaatgtgtcaagtgt 142  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  19994532 ctgacacttaatggagagatgctaatgtgtcaagtgt 19994496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1750 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold1750
Description:

Target: scaffold1750; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 481 - 221
Alignment:
Q  1 tcagtttaagcttccacagaaagcccagcggtggtatcacatctcggttagacattgtgagggagcgagagttgttcttggtggtggactacgaacacaa 100  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  481 tcagtttaagcttcaacagaaagctcagcggtggtatcacatctcggttagacattgtgagggagcgagagttgttcttggtggtggactacgaacacaa 382  T
Q  101 agatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatatgataaacatttaagtgagatga 200  Q
    ||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| |||||||    
T  381 agatcttgacacttaatggagagatgttaatgtggcaagtgtgagttaaaattttatattgtatgcaatagtagatgtgagaaacatttaagcgagatga 282  T
Q  201 ctcatatacataatgttttcagactttgaaagaagatgtgatgtgaatttcacttctgtga 261  Q
    ||| ||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||    
T  281 ctcgtatacataatactttcagactttgaaagaagatgtgatgtgaatctcacttctgtga 221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 43989571 - 43989825
Alignment:
Q  1 tcagtttaagcttccacagaaagcccagcggtggtatcacatctcggttagacattgtgagggagcgagagttgttcttggtggtggactacgaacacaa 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43989571 tcagtttaagcttccacagaaagcttagcggtggtatcacatctcggttagacattgtgagggagcgagagttgttcttggtggtggactacgaacacaa 43989670  T
Q  101 agatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatatgataaacatttaagtgagatga 200  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  43989671 agatcctgacacttaattgagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagatgtgagaaacatttaagtgagatga 43989770  T
Q  201 ctcatatacataatgttttcagactttgaaagaagatgtgatgtgaatttcactt 255  Q
     ||||||||||||||  ||||||||||||||||| ||||||||| ||| ||||||    
T  43989771 ttcatatacataatgccttcagactttgaaagaatatgtgatgttaatctcactt 43989825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 180
Target Start/End: Complemental strand, 38789067 - 38788960
Alignment:
Q  73 tgttcttggtggtggactacgaacacaaagatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagt 172  Q
    |||||| |||||||||  || |||||  |||  ||||||||||||| |||||||||||||||| |||||| ||||||||||| | ||||||||||| |||    
T  38789067 tgttctaggtggtggatcacaaacacggagagtctgacacttaatggagagatgttaatgtgttaagtgtaagttaaaatttcacattgtatgcaagagt 38788968  T
Q  173 aaatatga 180  Q
    | ||||||    
T  38788967 agatatga 38788960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 154
Target Start/End: Complemental strand, 4120149 - 4120049
Alignment:
Q  54 attgtgagggagcgagagttgttcttggtggtggactacgaacacaaagatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaatt 153  Q
    |||||| |||||| ||||| |||||| ||||| ||| || ||| |||| |  || |||||||||| ||||||  ||| ||||||||||| ||||||||||    
T  4120149 attgtgggggagcaagagtggttcttagtggtagaccacaaacgcaaacactctcacacttaatggagagatactaacgtgtcaagtgttagttaaaatt 4120050  T
Q  154 t 154  Q
    |    
T  4120049 t 4120049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 45406696 - 45406739
Alignment:
Q  111 acttaatgcagagatgttaatgtgtcaagtgtgagttaaaattt 154  Q
    |||||||| ||| ||||||||||||||| |||||||||||||||    
T  45406696 acttaatggagaaatgttaatgtgtcaattgtgagttaaaattt 45406739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 6677207 - 6677121
Alignment:
Q  124 atgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaa-tatgataaacatttaagtgagatgactcatatac 209  Q
    |||||||| ||| ||||||||||||||||| ||||||| ||| ||  ||||| | |||  ||||| || ||||||||||||||||||    
T  6677207 atgttaatttgttaagtgtgagttaaaattctatattgaatgaaaaggtaaattttgaacaacatatatgtgagatgactcatatac 6677121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 17474837 - 17474783
Alignment:
Q  96 cacaaagatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaa 150  Q
    ||||||||  |||||||||| || ||||||||||||||||||| | |||||||||    
T  17474837 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaa 17474783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 17510321 - 17510267
Alignment:
Q  96 cacaaagatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaa 150  Q
    ||||||||  |||||||||| || ||||||||||||||||||| | |||||||||    
T  17510321 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaa 17510267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 17542893 - 17542947
Alignment:
Q  96 cacaaagatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaa 150  Q
    ||||||||  |||||||||| || ||||||||||||||||||| | |||||||||    
T  17542893 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaa 17542947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 17578377 - 17578431
Alignment:
Q  96 cacaaagatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaa 150  Q
    ||||||||  |||||||||| || ||||||||||||||||||| | |||||||||    
T  17578377 cacaaagagtctgacacttactggagagatgttaatgtgtcaaatttgagttaaa 17578431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 22528932 - 22528969
Alignment:
Q  139 gtgtgagttaaaattttatattgtatgcaatagtaaat 176  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  22528932 gtgtgagttaaaattttacattgtatgcaagagtaaat 22528969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 2452121 - 2452177
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaat 176  Q
    |||||| ||||||| |||||||||||||||| ||| | |||| |||||| |||||||    
T  2452121 agagattttaatgtttcaagtgtgagttaaagtttcacattgaatgcaaaagtaaat 2452177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1345 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 1737 - 1995
Alignment:
Q  1 tcagtttaagcttccacagaaagcccagcggtggtatcacatctcggttagacattgtgagggagcgagagttgttcttggtggtggactacgaacacaa 100  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1737 tcagtttaagcttccacagaaagcaaagcggtggtatcacatctcggttagacattgtgagggagcgaaagttgttcttggtggtggactacgaacacaa 1836  T
Q  101 agatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatatgataaacatttaagtgagatga 200  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||| |    
T  1837 agatcctgacacttaattgagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagatgtgagaaacatttaagtgagataa 1936  T
Q  201 ctcatatacataatgttttcagactttgaaagaagatgtgatgtgaatttcacttctgtga 261  Q
    |||  |||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||    
T  1937 ctc--atacataatgctttcagactttgaaagaaaatgtgatgtgaatctcacttctgtga 1995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 255
Target Start/End: Complemental strand, 129191 - 128999
Alignment:
Q  61 gggagcgagagttgttcttggtggtggactacgaacacaaagatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatatt 160  Q
    ||||||| |||| |||||||||||||||  ||| |||| |||||| |||||||||||| ||| ||||||| |||| ||||||||||| |||||  |||||    
T  129191 gggagcgggagtggttcttggtggtggatcacggacacgaagatcatgacacttaatggagaaatgttaaagtgtaaagtgtgagtttaaattccatatt 129092  T
Q  161 gtatgcaatagtaaatatgataaacatttaagtgagatgactcatatacataatgttttcagactttgaaagaagatgtgatgtgaatttcactt 255  Q
    ||| |  | ||||||| |||  ||||| |||   |||| ||||||||||||||||  || ||| |||||||||||||||||  ||||| ||||||    
T  129091 gtaag--aaagtaaatgtgagcaacatataaaatagattactcatatacataatgccttaagattttgaaagaagatgtgagttgaatctcactt 128999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2098 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold2098
Description:

Target: scaffold2098; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 255
Target Start/End: Original strand, 221 - 415
Alignment:
Q  61 gggagcgagagttgttcttggtggtggactacgaacacaaagatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatatt 160  Q
    ||||||| ||||  ||||||||||||||  ||| |||  |||||  |||||| ||||| || ||||||||||||| |||| |||||| |||||  |||||    
T  221 gggagcgggagtgcttcttggtggtggatcacggacatgaagattttgacacataatggagggatgttaatgtgtaaagtttgagtttaaattccatatt 320  T
Q  161 gtatgcaatagtaaatatgataaacatttaagtgagatgactcatatacataatgttttcagactttgaaagaagatgtgatgtgaatttcactt 255  Q
    ||| |||| |||| || |||  ||||| |||  ||||| |||||| |||||||||  || ||||||||||||||||| ||| |||||| ||||||    
T  321 gtaagcaagagtagatgtgagcaacatataaaagagattactcatgtacataatgccttaagactttgaaagaagatatgaagtgaatctcactt 415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 13228691 - 13228789
Alignment:
Q  111 acttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaat-atgataaacatttaagtgagatgactcatata 208  Q
    |||||||| |||||||||||||||||||||||||||||||||   | |||| ||||||||||| ||  ||| |||||| ||||||||||||||||||||    
T  13228691 acttaatggagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgagatgactcatata 13228789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 73 - 173
Target Start/End: Complemental strand, 28475759 - 28475659
Alignment:
Q  73 tgttcttggtggtggactacgaacacaaagatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagt 172  Q
    |||||| |||||||||  ||||||||  |||  ||||||||||||| |||||||||||||||| |||||| ||||||||||| | ||||||||||| |||    
T  28475759 tgttctaggtggtggatcacgaacacggagagtctgacacttaatggagagatgttaatgtgttaagtgtaagttaaaatttcacattgtatgcaagagt 28475660  T
Q  173 a 173  Q
    |    
T  28475659 a 28475659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 6554542 - 6554635
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagta-aatatgataaacatttaagtgagatgactcatatacata 212  Q
    |||||||||||||||||||||||||||||||||| |||| || ||| || |||| | | |||  ||||| ||||||||||||||||||||||||    
T  6554542 agagatgttaatgtgtcaagtgtgagttaaaattctatagtggatggaagagtagattttgaataacatataagtgagatgactcatatacata 6554635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 268 - 315
Target Start/End: Original strand, 35648825 - 35648872
Alignment:
Q  268 aatttaaacttgagaggaactagaagagaaaataataaggagtttctg 315  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  35648825 aatttaaacttgagaggaactaaaagagaaaataataaggagtttctg 35648872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 11559503 - 11559573
Alignment:
Q  106 ctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaat 176  Q
    |||||||||| || |||||||||||| ||| |||||||| ||||||||| ||||||||||||| |||||||    
T  11559503 ctgacacttattgaagagatgttaatatgtaaagtgtgacttaaaatttgatattgtatgcaagagtaaat 11559573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 50158183 - 50158249
Alignment:
Q  107 tgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagta 173  Q
    |||||||||||| ||||||||||||||||||||| ||||||||| ||| | ||| ||||||| ||||    
T  50158183 tgacacttaatggagagatgttaatgtgtcaagtatgagttaaagtttcacattttatgcaagagta 50158249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 24183510 - 24183450
Alignment:
Q  113 ttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagta 173  Q
    |||||| |||||||||||||||| |||||| ||||||||||| | ||||||||||| ||||    
T  24183510 ttaatggagagatgttaatgtgttaagtgtaagttaaaatttcacattgtatgcaagagta 24183450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 314324 - 314417
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagta-aatatgataaacatttaagtgagatgactcatatacata 212  Q
    |||||||||||||||||||| ||||||||||||| |||  || ||  || |||| | | |||  ||||| ||||||||||||||||||||||||    
T  314324 agagatgttaatgtgtcaagcgtgagttaaaattctatggtggatagaagagtagattttgaataacatataagtgagatgactcatatacata 314417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 8057770 - 8057676
Alignment:
Q  121 gagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaa-tatgataaacatttaagtgagatgactcatatacataatg 215  Q
    ||||||||||| |||||| | ||||||||| || ||||||| |||||| |||||| | |||||| ||| ||||||| |||| |||||||| |||||    
T  8057770 gagatgttaatttgtcaactatgagttaaagttctatattggatgcaagagtaaattttgataagcatataagtgatatga-tcatatacctaatg 8057676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 42729545 - 42729453
Alignment:
Q  125 tgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatat-gataaacatttaagtgagatgactcatatacataatgttt 218  Q
    |||||| ||||||||||  ||||||||||  | | |||||||||||||| || | || |||||| ||||||||||||||||||||| || |||||    
T  42729545 tgttaacgtgtcaagtg--agttaaaattcaacaatgtatgcaatagtacatgttgagaaacatataagtgagatgactcatatacctactgttt 42729453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 261
Target Start/End: Complemental strand, 13240766 - 13240688
Alignment:
Q  183 aacatttaagtgagatgactcatatacataatgttttcagactttgaaagaagatgtgatgtgaatttcacttctgtga 261  Q
    ||||| |||||||||| ||| ||||||||||||  |  ||| ||||||| |||||||||||||||| ||| || |||||    
T  13240766 aacatataagtgagattactgatatacataatgcctcaagaatttgaaaaaagatgtgatgtgaatctcagttgtgtga 13240688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 178
Target Start/End: Original strand, 11560207 - 11560276
Alignment:
Q  109 acacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatat 178  Q
    |||||||| | |||||||||||||||||| | |||||||||| || || |||| |||||| |||| ||||    
T  11560207 acacttaagggagagatgttaatgtgtcatgggtgagttaaacttatacattggatgcaagagtatatat 11560276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 24182575 - 24182482
Alignment:
Q  124 atgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatat-gataaacatttaagtgagatgactcatatacataatgt 216  Q
    |||||||||||||| |||| ||||||| || || |||| | |||| |||| |||| || ||||||  | ||||||||||| |||||||||||||    
T  24182575 atgttaatgtgtcatgtgtaagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgt 24182482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 281928 - 281960
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaaat 152  Q
    |||||||||||||||||||||||| ||||||||    
T  281928 agagatgttaatgtgtcaagtgtgggttaaaat 281960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 38016020 - 38015922
Alignment:
Q  111 acttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaat-atgataaacatttaagtgagatgactcatata 208  Q
    |||| ||| |||||||||||||||||||||||||||||||||   | |||| ||||||||||| ||  |||  ||||| ||||||||||||||||||||    
T  38016020 acttgatggagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagcaacatataagtgagatgactcatata 38015922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 9024953 - 9025046
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagta-aatatgataaacatttaagtgagatgactcatatacata 212  Q
    |||||||||||||||||||||||||||||||||| |||| || ||  || |||| | | |||  ||||| ||||||||||||||||||||||||    
T  9024953 agagatgttaatgtgtcaagtgtgagttaaaattatatagtggatagaagagtagattttgaataacatataagtgagatgactcatatacata 9025046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 156
Target Start/End: Original strand, 24539577 - 24539628
Alignment:
Q  105 cctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaatttta 156  Q
    |||||||||||||| ||| |||||||||| ||||||||||||  ||||||||    
T  24539577 cctgacacttaatggagatatgttaatgtatcaagtgtgagtccaaatttta 24539628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 9012804 - 9012759
Alignment:
Q  109 acacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattt 154  Q
    |||||||||| ||| || |||||||||||||||| |||||||||||    
T  9012804 acacttaatggagacatattaatgtgtcaagtgttagttaaaattt 9012759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 23570670 - 23570629
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaaattttatattg 161  Q
    |||| |||||||||||||||| |||||||||| |||||||||    
T  23570670 agaggtgttaatgtgtcaagtatgagttaaaaatttatattg 23570629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 30327083 - 30327042
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaaattttatattg 161  Q
    |||| |||||||||||||||| |||||||||| |||||||||    
T  30327083 agaggtgttaatgtgtcaagtatgagttaaaaatttatattg 30327042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 33332 - 33235
Alignment:
Q  111 acttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaat-atgataaacatttaagtgagatgactcatat 207  Q
    |||||||| ||||||||||||||||||| |||||||||||||   | |||| ||||||||||| ||  |||  ||||| |||||||||||||||||||    
T  33332 acttaatgaagagatgttaatgtgtcaaatgtgagttaaaataacacattgaatgcaatagtagatgttgaacaacatataagtgagatgactcatat 33235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 173
Target Start/End: Original strand, 5115 - 5215
Alignment:
Q  73 tgttcttggtggtggactacgaacacaaagatcctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagt 172  Q
    |||||| ||||||||   ||||||||  |||  ||||||||||||| |||||||||||||| | |||||| ||||||||||| | ||||||||||| |||    
T  5115 tgttctaggtggtgggtcacgaacacggagagtctgacacttaatggagagatgttaatgttttaagtgtaagttaaaatttcacattgtatgcaagagt 5214  T
Q  173 a 173  Q
    |    
T  5215 a 5215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 42797362 - 42797278
Alignment:
Q  122 agatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaat-atgataaacatttaagtgagatgactcat 205  Q
    |||||||||||||||||||||||||||||||   | |||| ||||||||||| ||  ||| |||||| |||||||||||||||||    
T  42797362 agatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtatatgttgagaaacatataagtgagatgactcat 42797278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 13756548 - 13756630
Alignment:
Q  124 atgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaat-atgataaacatttaagtgagatgactcat 205  Q
    |||||||||||||||||||||||||||||   | |||| ||||||||||| ||  ||| |||||||||||||| |||||||||    
T  13756548 atgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatttaagtgaaatgactcat 13756630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 41527115 - 41527022
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagta-aatatgataaacatttaagtgagatgactcatatacata 212  Q
    |||||| ||||||||||||||||||||||||||| |||| || ||  || |||| | | |||  ||||| ||||||||||||||||||||||||    
T  41527115 agagatattaatgtgtcaagtgtgagttaaaattctatagtggatagaagagtagattttgaataacatataagtgagatgactcatatacata 41527022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 17871244 - 17871296
Alignment:
Q  126 gttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatat 178  Q
    ||||||||||||||||||||||||| ||||| |||| ||| || |||||||||    
T  17871244 gttaatgtgtcaagtgtgagttaaagttttacattgaatgtaagagtaaatat 17871296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 38290542 - 38290578
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaaatttta 156  Q
    ||||||||||||||||||||||||||||| |||||||    
T  38290542 agagatgttaatgtgtcaagtgtgagttataatttta 38290578  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 14373959 - 14374002
Alignment:
Q  189 taagtgagatgactcatatacataatgttttcagactttgaaag 232  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||||    
T  14373959 taagtgagatgacccatatacctaatgttttaagactttgaaag 14374002  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 10901530 - 10901468
Alignment:
Q  111 acttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagta 173  Q
    |||||||| |||||||||||||| |||| |||||||||||||   | |||| |||||||||||    
T  10901530 acttaatggagagatgttaatgtatcaaatgtgagttaaaataacacattgaatgcaatagta 10901468  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 205
Target Start/End: Complemental strand, 23141874 - 23141788
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaat-atgataaacatttaagtgagatgactcat 205  Q
    ||||||||||| ||||||||| |||||||||||   | |||| ||||||||||| ||  ||| |||||| ||| |||||||||||||    
T  23141874 agagatgttaacgtgtcaagtatgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataaatgagatgactcat 23141788  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 361048 - 361089
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaaattttatattg 161  Q
    |||| |||||||||||||||| |||||||||| |||||||||    
T  361048 agaggtgttaatgtgtcaagtatgagttaaaaatttatattg 361089  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 15276895 - 15276802
Alignment:
Q  124 atgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatat-gataaacatttaagtgagatgactcatatacataatgt 216  Q
    |||||||||||||| |||| ||||||| || || |||| | |||| |||| |||| || ||||||  | ||||||||||| |||||||||||||    
T  15276895 atgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgt 15276802  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 15457264 - 15457171
Alignment:
Q  124 atgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtaaatat-gataaacatttaagtgagatgactcatatacataatgt 216  Q
    |||||||||||||| |||| ||||||| || || |||| | |||| |||| |||| || ||||||  | ||||||||||| |||||||||||||    
T  15457264 atgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgt 15457171  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 23686609 - 23686650
Alignment:
Q  109 acacttaatgcagagatgttaatgtgtcaagtgtgagttaaa 150  Q
    |||||||| | |||||||||||| ||||||||||||||||||    
T  23686609 acacttaagggagagatgttaatatgtcaagtgtgagttaaa 23686650  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 5685877 - 5685921
Alignment:
Q  109 acacttaatgcagagatgttaatgtgtcaagtgtgagttaaaatt 153  Q
    |||||||| | |||||||||||||||||| |||||||||| ||||    
T  5685877 acacttaaaggagagatgttaatgtgtcatgtgtgagttataatt 5685921  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 8357734 - 8357690
Alignment:
Q  111 acttaatgcagagatgttaatgtgtcaagtgtgagttaaaatttt 155  Q
    ||||||||  || |||| |||||||||||||||||||||||||||    
T  8357734 acttaatgttgaaatgtcaatgtgtcaagtgtgagttaaaatttt 8357690  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 15277827 - 15277767
Alignment:
Q  113 ttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagta 173  Q
    |||||| ||||||||||||||||  ||||| ||||||||||| | |||||| |||| ||||    
T  15277827 ttaatggagagatgttaatgtgtttagtgtaagttaaaatttcacattgtaagcaagagta 15277767  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 15458196 - 15458136
Alignment:
Q  113 ttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagta 173  Q
    |||||| ||||||||||||||||  ||||| ||||||||||| | |||||| |||| ||||    
T  15458196 ttaatggagagatgttaatgtgtttagtgtaagttaaaatttcacattgtaagcaagagta 15458136  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 25087495 - 25087451
Alignment:
Q  111 acttaatgcagagatgttaatgtgtcaagtgtgagttaaaatttt 155  Q
    ||||||||  || |||| |||||||||||||||||||||||||||    
T  25087495 acttaatgttgaaatgtcaatgtgtcaagtgtgagttaaaatttt 25087451  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 45245323 - 45245355
Alignment:
Q  129 aatgtgtcaagtgtgagttaaaattttatattg 161  Q
    ||||||||||||||||||||||| |||||||||    
T  45245323 aatgtgtcaagtgtgagttaaaaatttatattg 45245355  T

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Target: scaffold0114 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 37041 - 37134
Alignment:
Q  120 agagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagta-aatatgataaacatttaagtgagatgactcatatacata 212  Q
    |||||||||||||||||||||||||||||||||| |||| || ||  || |||| | | |||  ||||| |||||||||||| |||||||||||    
T  37041 agagatgttaatgtgtcaagtgtgagttaaaattctatagtggatagaagagtagattttgaataacatataagtgagatgattcatatacata 37134  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 50451 - 50511
Alignment:
Q  106 ctgacacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgc 166  Q
    |||| |||||||| |||||||| ||||||||||||| |||||||| || ||||||| ||||    
T  50451 ctgaaacttaatgtagagatgtcaatgtgtcaagtgcgagttaaagttctatattggatgc 50511  T

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Target: scaffold0377 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 200
Target Start/End: Complemental strand, 12648 - 12554
Alignment:
Q  109 acacttaatgcagagatgttaatgtgtcaagtgtgagttaaaattttat--attgtatgcaatagtaaata-tgataaacatttaagtgagatga 200  Q
    |||||||| | |||||||||||||||||| |||||||||||| || |||  |||  |||||| |||||||| |||  ||||| ||||||||||||    
T  12648 acacttaaggaagagatgttaatgtgtcatgtgtgagttaaatttctatacattagatgcaagagtaaatattgagcaacatgtaagtgagatga 12554  T

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Target: scaffold0169 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 2278 - 2319
Alignment:
Q  112 cttaatgcagagatgttaatgtgtcaagtgtgagttaaaatt 153  Q
    ||||||| ||| ||||||||||||||||||| ||||||||||    
T  2278 cttaatgaagatatgttaatgtgtcaagtgtaagttaaaatt 2319  T

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Target: scaffold0155 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 22666 - 22626
Alignment:
Q  108 gacacttaatgcagagatgttaatgtgtcaagtgtgagtta 148  Q
    ||||||||||||| | || ||||||||||||||||||||||    
T  22666 gacacttaatgcaaaaatcttaatgtgtcaagtgtgagtta 22626  T

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