View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_88 (Length: 314)

Name: NF6865A_low_88
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_88
NF6865A_low_88
[»] chr6 (1 HSPs)
chr6 (24-294)||(16776069-16776339)
[»] chr3 (2 HSPs)
chr3 (24-294)||(5381645-5381911)
chr3 (24-294)||(13721412-13721678)
[»] scaffold0015 (1 HSPs)
scaffold0015 (24-294)||(27827-28093)
[»] chr8 (1 HSPs)
chr8 (24-294)||(87996-88262)
[»] chr7 (2 HSPs)
chr7 (24-294)||(11712850-11713116)
chr7 (24-294)||(13162058-13162325)
[»] chr1 (3 HSPs)
chr1 (24-294)||(42376868-42377134)
chr1 (24-294)||(14475175-14475441)
chr1 (24-294)||(2795425-2795691)
[»] scaffold0008 (1 HSPs)
scaffold0008 (215-282)||(89631-89698)
[»] chr4 (1 HSPs)
chr4 (215-282)||(45163464-45163531)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 24 - 294
Target Start/End: Complemental strand, 16776339 - 16776069
Alignment:
Q  24 agacgatgttgttcgtttagccatgcgagtggagaaacatttacccaagaagcattcttataggaattttacctccactgagaattcttcttatccctac 123  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16776339 agacgatgttgttcgtttggccatgtgagtggagaaacatttacccaagaagcattcttataggaattttacctccactgagaattcttcttatccctac 16776240  T
Q  124 aaaacagaaaacgatcagcctagtacgtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttaaaatgtcaa 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  16776239 aaaacagaaaacgatcagcctagtacgtacttctacaaaaccttctcctaaacccactacagattataaacccaaagctaccaagtgtttaaaatgtcaa 16776140  T
Q  224 ggttttggacatatagcttcaaattgtccaacacgaagaacgatcaccatcatcaaaggaaaagcttatga 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16776139 ggttttggacatatagcttcaaattgtccaacacgaagaacgatcaccatcatcaaaggagaagcttatga 16776069  T

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Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 24 - 294
Target Start/End: Complemental strand, 5381911 - 5381645
Alignment:
Q  24 agacgatgttgttcgtttagccatgcgagtggagaaacatttacccaagaagcattcttataggaattttacctccactgagaattcttcttatccctac 123  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |    
T  5381911 agacgatgttgttcgtttggccatgcgagtggagaaacatttacccaagaagcattcttataggaatttttcctccactgagaattcttcttatccccgc 5381812  T
Q  124 aaaacagaaaacgatcagcctagtacgtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttaaaatgtcaa 223  Q
    |||||||| |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5381811 aaaacagacaacgatcagcctagtac----ttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaa 5381716  T
Q  224 ggttttggacatatagcttcaaattgtccaacacgaagaacgatcaccatcatcaaaggaaaagcttatga 294  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  5381715 ggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatga 5381645  T

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Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 24 - 294
Target Start/End: Complemental strand, 13721678 - 13721412
Alignment:
Q  24 agacgatgttgttcgtttagccatgcgagtggagaaacatttacccaagaagcattcttataggaattttacctccactgagaattcttcttatccctac 123  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |    
T  13721678 agacgatgttgttcgtttggccatgcgagtggagaaacatttacccaagaagcattcttataggaatttttcctccactgagaattcttcttatccccgc 13721579  T
Q  124 aaaacagaaaacgatcagcctagtacgtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttaaaatgtcaa 223  Q
    |||||||| ||||||||||| |||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13721578 aaaacagacaacgatcagcccagtac----ttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaa 13721483  T
Q  224 ggttttggacatatagcttcaaattgtccaacacgaagaacgatcaccatcatcaaaggaaaagcttatga 294  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  13721482 ggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatga 13721412  T

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Target: scaffold0015 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 24 - 294
Target Start/End: Complemental strand, 28093 - 27827
Alignment:
Q  24 agacgatgttgttcgtttagccatgcgagtggagaaacatttacccaagaagcattcttataggaattttacctccactgagaattcttcttatccctac 123  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |    
T  28093 agacgatgttgttcgtttggccatgcgagtggagaaacatttacccaagaagcattcttataggaatttttcctccactgagaattcttcttatccccgc 27994  T
Q  124 aaaacagaaaacgatcagcctagtacgtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttaaaatgtcaa 223  Q
    |||||||| ||||||||||| |||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27993 aaaacagacaacgatcagcccagtac----ttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaa 27898  T
Q  224 ggttttggacatatagcttcaaattgtccaacacgaagaacgatcaccatcatcaaaggaaaagcttatga 294  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  27897 ggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatga 27827  T

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Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 24 - 294
Target Start/End: Original strand, 87996 - 88262
Alignment:
Q  24 agacgatgttgttcgtttagccatgcgagtggagaaacatttacccaagaagcattcttataggaattttacctccactgagaattcttcttatccctac 123  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |    
T  87996 agacgatgttgttcgtttggccatgcgagtggagaaacatttacccaagaagcattcttataggaatttttcctccactgagaattcttcttatccccgc 88095  T
Q  124 aaaacagaaaacgatcagcctagtacgtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttaaaatgtcaa 223  Q
    |||||||| ||||||||||| |||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  88096 aaaacagacaacgatcagcccagtac----ttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaa 88191  T
Q  224 ggttttggacatatagcttcaaattgtccaacacgaagaacgatcaccatcatcaaaggaaaagcttatga 294  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  88192 ggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatga 88262  T

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Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 24 - 294
Target Start/End: Original strand, 11712850 - 11713116
Alignment:
Q  24 agacgatgttgttcgtttagccatgcgagtggagaaacatttacccaagaagcattcttataggaattttacctccactgagaattcttcttatccctac 123  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |    
T  11712850 agacgatgttgttcgtttggccatgcgagtggagaaacatttacccaagaagcattcttataggaatttttcctccactgagaattcttcttatccccgc 11712949  T
Q  124 aaaacagaaaacgatcagcctagtacgtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttaaaatgtcaa 223  Q
    |||||||| ||||||||||| |||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11712950 aaaacagacaacgatcagcccagtac----ttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaa 11713045  T
Q  224 ggttttggacatatagcttcaaattgtccaacacgaagaacgatcaccatcatcaaaggaaaagcttatga 294  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  11713046 ggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatga 11713116  T

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Target: chr7; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 24 - 294
Target Start/End: Original strand, 13162058 - 13162325
Alignment:
Q  24 agacgatgttgttcgtttagccatgcgagtggagaaacatttacccaagaagcattcttataggaattttacctccactgagaattcttcttatccctac 123  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||  |    
T  13162058 agacgatgttgttcgtttggccatgcgagtggagaaacatttacccaagaagcattcttataggaatttttcctccactaagaattcttcttatccccgc 13162157  T
Q  124 aaaacagaaaacgatcagcctagtacgtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttaaaatgtc-a 222  Q
    |||||||| || |||||||| |     ||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| ||||||| |    
T  13162158 aaaacagacaatgatcagccca----atacttctacaaaaccttcttctaaacccaccacagaaaataaacccaaagctacaaagtgtttcaaatgtcaa 13162253  T
Q  223 aggttttggacatatagcttcaaattgtccaacacgaagaacgatcaccatcatcaaaggaaaagcttatga 294  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||    
T  13162254 aggttttggacatatagcttcaaattgtccaacccgaagaaccatcaccatcatcaaaggagaagcttatga 13162325  T

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Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 24 - 294
Target Start/End: Original strand, 42376868 - 42377134
Alignment:
Q  24 agacgatgttgttcgtttagccatgcgagtggagaaacatttacccaagaagcattcttataggaattttacctccactgagaattcttcttatccctac 123  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |    
T  42376868 agacgatgttgttcgtttggccatgcgagtggagaaacatttacccaagaagcattcttataggaatttttcctccactgagaattcttcttatccccgc 42376967  T
Q  124 aaaacagaaaacgatcagcctagtacgtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttaaaatgtcaa 223  Q
    |||||||| ||||||||||| |||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42376968 aaaacagacaacgatcagcccagtac----ttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaa 42377063  T
Q  224 ggttttggacatatagcttcaaattgtccaacacgaagaacgatcaccatcatcaaaggaaaagcttatga 294  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  42377064 ggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatga 42377134  T

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Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 24 - 294
Target Start/End: Complemental strand, 14475441 - 14475175
Alignment:
Q  24 agacgatgttgttcgtttagccatgcgagtggagaaacatttacccaagaagcattcttataggaattttacctccactgagaattcttcttatccctac 123  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |    
T  14475441 agacgatgttgttcgtttggccatgcgagtggagaaacatttacccaagaagcattcttataggaatttttcctccactgagaattcttcttatccccgc 14475342  T
Q  124 aaaacagaaaacgatcagcctagtacgtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttaaaatgtcaa 223  Q
    |||||||| ||||||||||| |||||    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  14475341 aaaacagacaacgatcagcccagtac----ttctacaaaaccttctcctaaaaccactacagaaaataaacccaaagctaccaagtgtttcaaatgtcaa 14475246  T
Q  224 ggttttggacatatagcttcaaattgtccaacacgaagaacgatcaccatcatcaaaggaaaagcttatga 294  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  14475245 ggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatga 14475175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 24 - 294
Target Start/End: Complemental strand, 2795691 - 2795425
Alignment:
Q  24 agacgatgttgttcgtttagccatgcgagtggagaaacatttacccaagaagcattcttataggaattttacctccactgagaattcttcttatccctac 123  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||  |    
T  2795691 agacgatgttgttcgtttggccatgtgagtggagaaacatttacccaagaagcattcttataggaatttttcctccactaagaattcttcttatccccgc 2795592  T
Q  124 aaaacagaaaacgatcagcctagtacgtacttctacaaaaccttctcctaaacccactacagaaaataaacccaaagctaccaagtgtttaaaatgtcaa 223  Q
    |||||||| ||||||||||| |  ||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  2795591 aaaacagacaacgatcagccca--ac--acttctacaaaaccttcttctaaacccactacagaaaataaacccaaagctaccaagtgtttcaaatttcaa 2795496  T
Q  224 ggttttggacatatagcttcaaattgtccaacacgaagaacgatcaccatcatcaaaggaaaagcttatga 294  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  2795495 ggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatga 2795425  T

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Target: scaffold0008 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 89631 - 89698
Alignment:
Q  215 aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaacgatcaccatcatcaaagg 282  Q
    ||||||||||| ||||||||||| |||||  |||||||||  || | ||| |||||||||||||||||    
T  89631 aaatgtcaagggtttggacatattgcttctgattgtccaaatcgcaaaaccatcaccatcatcaaagg 89698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 45163464 - 45163531
Alignment:
Q  215 aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaacgatcaccatcatcaaagg 282  Q
    ||||||||||| ||||||||||| |||||  |||||||||  || | ||| |||||||||||||||||    
T  45163464 aaatgtcaagggtttggacatattgcttctgattgtccaaatcgcaaaaccatcaccatcatcaaagg 45163531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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