View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6865A_low_89 (Length: 311)
Name: NF6865A_low_89
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_89 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 56168518 - 56168811
Alignment:
| Q |
18 |
atcacaggatcagcgggagattagtcttgaaggatttaggaccaagagatataatgtgcttgctgcaaccgatgttgctggacgtggtattgacattcct |
117 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56168518 |
atcacaagatcagagggagattagtcttgaaggatttaggaccaagagatataatgtgcttgttgcaaccgatgttgctggacgtggtattgacattcct |
56168617 |
T |
|
| Q |
118 |
gatgtggctcatgttatcaactatgatatgcctgggaatattgaaatgtacacccatcgtattgggcgtactggtcgtgcaggaaagacaggtgtggcta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56168618 |
gatgtggctcatgttatcaactatgatatgcctgggaatattgaaatgtacacccatcgtattgggcgtactggtcgtgcaggaaagacaggtgtggcta |
56168717 |
T |
|
| Q |
218 |
caacattcctgactcttcaggacactgatgtcttttatgaacttaagcagatgctcattcagagtaacagtcctgttccacctgaattggcaag |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56168718 |
caacattcctgactcttcaggacactgatgtcttttatgaacttaagcagatgctcattcagagtaacagtcctgttccacctgaattggcaag |
56168811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 707192 - 706899
Alignment:
| Q |
18 |
atcacaggatcagcgggagattagtcttgaaggatttaggaccaagagatataatgtgcttgctgcaaccgatgttgctggacgtggtattgacattcct |
117 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
707192 |
atcacaggatcagagggaaattagtcttgaaggatttaggaccaagagatataatgtgcttgttgcaaccgatgttgctggacgtggtattgacattcct |
707093 |
T |
|
| Q |
118 |
gatgtggctcatgttatcaactatgatatgcctgggaatattgaaatgtacacccatcgtattgggcgtactggtcgtgcaggaaagacaggtgtggcta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||| |
|
|
| T |
707092 |
gatgtggctcatgttatcaactatgatatgcctgggaatattgaaatgtacacccatcgtattgggcgtaccggccgtgcaggaaagacgggtgtggcta |
706993 |
T |
|
| Q |
218 |
caacattcctgactcttcaggacactgatgtcttttatgaacttaagcagatgctcattcagagtaacagtcctgttccacctgaattggcaag |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
706992 |
caacattcctgactcttcaggacactgatgtcttttatgaacttaagcagatgctcattcagagtaacagtcctgttccacatgaattggcaag |
706899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University