View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_9 (Length: 475)

Name: NF6865A_low_9
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_9
NF6865A_low_9
[»] chr7 (4 HSPs)
chr7 (15-467)||(32001707-32002160)
chr7 (391-458)||(42713624-42713689)
chr7 (394-430)||(18819465-18819501)
chr7 (388-424)||(46896128-46896164)
[»] chr4 (10 HSPs)
chr4 (388-458)||(25209789-25209858)
chr4 (388-453)||(29728744-29728809)
chr4 (388-450)||(28485771-28485832)
chr4 (388-423)||(49437752-49437787)
chr4 (394-424)||(20863763-20863793)
chr4 (391-424)||(10184754-10184787)
chr4 (388-421)||(23149866-23149899)
chr4 (400-449)||(35437736-35437785)
chr4 (394-423)||(47774069-47774098)
chr4 (388-424)||(50744800-50744836)
[»] chr2 (6 HSPs)
chr2 (388-452)||(16452163-16452225)
chr2 (388-451)||(26849188-26849247)
chr2 (401-451)||(8452537-8452586)
chr2 (388-444)||(10843148-10843205)
chr2 (394-422)||(15997486-15997514)
chr2 (394-422)||(33582411-33582439)
[»] chr3 (8 HSPs)
chr3 (388-453)||(54258426-54258487)
chr3 (388-450)||(34881077-34881135)
chr3 (388-450)||(34881352-34881410)
chr3 (394-431)||(53506222-53506259)
chr3 (388-453)||(10448010-10448071)
chr3 (394-423)||(35418065-35418094)
chr3 (394-449)||(223121-223177)
chr3 (388-424)||(20494021-20494057)
[»] chr8 (8 HSPs)
chr8 (388-449)||(26413398-26413458)
chr8 (388-447)||(30005749-30005806)
chr8 (388-451)||(32535467-32535528)
chr8 (388-423)||(39162257-39162292)
chr8 (403-458)||(42476976-42477030)
chr8 (388-424)||(20692885-20692921)
chr8 (388-423)||(5135252-5135287)
chr8 (388-423)||(6802063-6802098)
[»] chr1 (8 HSPs)
chr1 (398-451)||(37379294-37379345)
chr1 (388-453)||(3949977-3950047)
chr1 (388-424)||(9922205-9922241)
chr1 (393-429)||(15873796-15873832)
chr1 (388-451)||(16469221-16469285)
chr1 (388-423)||(40905823-40905858)
chr1 (389-423)||(19612233-19612267)
chr1 (394-431)||(45806172-45806209)
[»] chr5 (2 HSPs)
chr5 (393-430)||(37993615-37993652)
chr5 (394-450)||(10301392-10301446)
[»] chr6 (1 HSPs)
chr6 (388-421)||(988922-988955)


Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 15 - 467
Target Start/End: Original strand, 32001707 - 32002160
Alignment:
Q  15 atcaaaaggttgcgcccaacaaaagcttacgtagccatcaacaagtttctgaaggtcaagctgcacatttccaagcatccccaaaactttacctgcatac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001707 atcaaaaggttgcgcccaacaaaagcttacgtagccatcaacaagtttctgaaggtcaagctgcacatttccaagcatccccaaaactttacctgcatac 32001806  T
Q  115 agttcataacaactgtagcaacaactaaacatgatttaaatcaactagcataaaagctaggtaatttagatatggaagtgacgaaaaatttacccactta 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32001807 agttcataacaactgtagcaacaactaaacatgatttaaatcaactagcataaaagctaggtaatttagatatggaagtgacgaaaaatttacccactca 32001906  T
Q  215 ccactctcttcatcatcatttaaggcagttttctccaatagacaagtacccatttcttgcaatgactccgaaaattctggaatatgtatcacaacaaaga 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001907 ccactctcttcatcatcatttaaggcagttttctccaatagacaagtacccatttcttgcaatgactccgaaaattctggaatatgtatcacaacaaaga 32002006  T
Q  315 taccttaagagactttaatttctcaaggcaataactgatcagg-gaaaaaacgcatgaaaaatacannnnnnnnaatggcaaatgttagtatgttaattg 413  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||        ||||||||||||||||||||||||||    
T  32002007 taccttaagagactttaatttctcaaggcaataactgatcaggaaaaaaaacgcatgaaaaatacattttttttaatggcaaatgttagtatgttaattg 32002106  T
Q  414 ttatgttagttctttttctccttgccaggacttgaacccttgaccggcaacacc 467  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  32002107 ttatgttagttctttttctccttgccaggacttaaacccttgaccgccaacacc 32002160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 458
Target Start/End: Complemental strand, 42713689 - 42713624
Alignment:
Q  391 ggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacccttgacc 458  Q
    |||||||||||||||||| |||| |||||||||  ||||||||||||||| ||||| |||||| ||||    
T  42713689 ggcaaatgttagtatgttgattgatatgttagt--tttttctccttgccaagacttaaaccctggacc 42713624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 430
Target Start/End: Original strand, 18819465 - 18819501
Alignment:
Q  394 aaatgttagtatgttaattgttatgttagttcttttt 430  Q
    |||||||||||||||||||||||| |||||| |||||    
T  18819465 aaatgttagtatgttaattgttatattagtttttttt 18819501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 424
Target Start/End: Original strand, 46896128 - 46896164
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagtt 424  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  46896128 aatgacaaatgttagtatgttaattgttattttagtt 46896164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 388 - 458
Target Start/End: Complemental strand, 25209858 - 25209789
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacccttgacc 458  Q
    ||||||||||||||||||||||||| ||||||||| | |||||||||||||||  ||||||||||| ||||    
T  25209858 aatggcaaatgttagtatgttaattattatgttag-tatttttctccttgccaaaacttgaaccctggacc 25209789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 453
Target Start/End: Original strand, 29728744 - 29728809
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaaccct 453  Q
    |||| ||| |||||||||||||||||||||||||||| |||||||||||   ||||||||||||||    
T  29728744 aatgacaagtgttagtatgttaattgttatgttagttttttttctccttaataggacttgaaccct 29728809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 450
Target Start/End: Complemental strand, 28485832 - 28485771
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaac 450  Q
    |||| |||||||||||||||||||||||||||||  | |||||||||||| || |||||||||    
T  28485832 aatgacaaatgttagtatgttaattgttatgtta-atatttttctccttgtcatgacttgaac 28485771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 49437787 - 49437752
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagt 423  Q
    |||||||||||||||||||||||||||| |||||||    
T  49437787 aatggcaaatgttagtatgttaattgttgtgttagt 49437752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 424
Target Start/End: Complemental strand, 20863793 - 20863763
Alignment:
Q  394 aaatgttagtatgttaattgttatgttagtt 424  Q
    |||||||||||||||||||||||||||||||    
T  20863793 aaatgttagtatgttaattgttatgttagtt 20863763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 10184754 - 10184787
Alignment:
Q  391 ggcaaatgttagtatgttaattgttatgttagtt 424  Q
    ||||||||||||||| ||||||||||||||||||    
T  10184754 ggcaaatgttagtatcttaattgttatgttagtt 10184787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 421
Target Start/End: Original strand, 23149866 - 23149899
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgtta 421  Q
    |||| |||||||||||||||||||||||||||||    
T  23149866 aatgacaaatgttagtatgttaattgttatgtta 23149899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 35437785 - 35437736
Alignment:
Q  400 tagtatgttaattgttatgttagttctttttctccttgccaggacttgaa 449  Q
    ||||||||||||||||||||||||  ||||| || |||| ||||||||||    
T  35437785 tagtatgttaattgttatgttagtattttttttcattgctaggacttgaa 35437736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 423
Target Start/End: Original strand, 47774069 - 47774098
Alignment:
Q  394 aaatgttagtatgttaattgttatgttagt 423  Q
    ||||||||||||||||||||||||||||||    
T  47774069 aaatgttagtatgttaattgttatgttagt 47774098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 424
Target Start/End: Complemental strand, 50744836 - 50744800
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagtt 424  Q
    |||| |||||||||| |||||||||||||||||||||    
T  50744836 aatgacaaatgttagcatgttaattgttatgttagtt 50744800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 452
Target Start/End: Original strand, 16452163 - 16452225
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaaccc 452  Q
    |||||||||||||||||||||| |||||| ||||||  ||||||||||||| |||||||||||||    
T  16452163 aatggcaaatgttagtatgttatttgttacgttagt--tttttctccttgctaggacttgaaccc 16452225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 451
Target Start/End: Original strand, 26849188 - 26849247
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacc 451  Q
    |||||||||| ||||||||||||||||||| ||||    ||||||||||||||| |||||||||    
T  26849188 aatggcaaatattagtatgttaattgttatattag----ttttctccttgccagcacttgaacc 26849247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 451
Target Start/End: Complemental strand, 8452586 - 8452537
Alignment:
Q  401 agtatgttaattgttatgttagttctttttctccttgccaggacttgaacc 451  Q
    |||||||||||||||||||||| | ||||||||||| |||||| |||||||    
T  8452586 agtatgttaattgttatgttag-tatttttctccttaccaggatttgaacc 8452537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 444
Target Start/End: Complemental strand, 10843205 - 10843148
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttag-ttctttttctccttgccaggac 444  Q
    ||||||||||||||||  ||||||||||||| ||| || |||||||||||| ||||||    
T  10843205 aatggcaaatgttagttggttaattgttatgctagtttttttttctccttgtcaggac 10843148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 422
Target Start/End: Complemental strand, 15997514 - 15997486
Alignment:
Q  394 aaatgttagtatgttaattgttatgttag 422  Q
    |||||||||||||||||||||||||||||    
T  15997514 aaatgttagtatgttaattgttatgttag 15997486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 422
Target Start/End: Complemental strand, 33582439 - 33582411
Alignment:
Q  394 aaatgttagtatgttaattgttatgttag 422  Q
    |||||||||||||||||||||||||||||    
T  33582439 aaatgttagtatgttaattgttatgttag 33582411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 388 - 453
Target Start/End: Complemental strand, 54258487 - 54258426
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaaccct 453  Q
    |||||||||||||||||||||||||||||||||||    ||||||||||  |||||||||||||||    
T  54258487 aatggcaaatgttagtatgttaattgttatgttag----ttttctccttaacaggacttgaaccct 54258426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 450
Target Start/End: Complemental strand, 34881135 - 34881077
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaac 450  Q
    |||| ||||||||| ||||||||||||| ||||||    ||||||||||||||||||||||||    
T  34881135 aatgacaaatgttaatatgttaattgttttgttag----ttttctccttgccaggacttgaac 34881077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 450
Target Start/End: Complemental strand, 34881410 - 34881352
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaac 450  Q
    |||| ||||||||| ||||||||||||| ||||||    ||||||||||||||||||||||||    
T  34881410 aatgacaaatgttaatatgttaattgttttgttag----ttttctccttgccaggacttgaac 34881352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 431
Target Start/End: Complemental strand, 53506259 - 53506222
Alignment:
Q  394 aaatgttagtatgttaattgttatgttagttctttttc 431  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  53506259 aaatgttagtatgttaattgttatgttagttttttttc 53506222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 453
Target Start/End: Original strand, 10448010 - 10448071
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaaccct 453  Q
    ||||||||||| |||||||||||||||||| ||||||    || | ||||||||||||||||||||    
T  10448010 aatggcaaatgatagtatgttaattgttatattagtt----ttatacttgccaggacttgaaccct 10448071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 423
Target Start/End: Original strand, 35418065 - 35418094
Alignment:
Q  394 aaatgttagtatgttaattgttatgttagt 423  Q
    ||||||||||||||||||||||||||||||    
T  35418065 aaatgttagtatgttaattgttatgttagt 35418094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 449
Target Start/End: Complemental strand, 223177 - 223121
Alignment:
Q  394 aaatgttagtatgttaattgttatgttagttctttt-tctccttgccaggacttgaa 449  Q
    |||||||||||||||||||||| |||||||| |||| | ||||||  ||||||||||    
T  223177 aaatgttagtatgttaattgttgtgttagtttttttatttccttgtgaggacttgaa 223121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 424
Target Start/End: Complemental strand, 20494057 - 20494021
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagtt 424  Q
    |||| |||||||||||||||||||| |||||||||||    
T  20494057 aatgacaaatgttagtatgttaattattatgttagtt 20494021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 449
Target Start/End: Original strand, 26413398 - 26413458
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaa 449  Q
    |||| |||||||||||||||||||||||||||||| | ||||||||||| ||| ||||||||    
T  26413398 aatgacaaatgttagtatgttaattgttatgttagct-tttttctcctttccaagacttgaa 26413458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 447
Target Start/End: Complemental strand, 30005806 - 30005749
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttg 447  Q
    ||||| |||||||| | |||||||||||||||||||  ||||||||||||||||||||||    
T  30005806 aatggtaaatgttactttgttaattgttatgttagt--tttttctccttgccaggacttg 30005749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 451
Target Start/End: Complemental strand, 32535528 - 32535467
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacc 451  Q
    |||| ||||||||| ||||||||||||||||||||  ||||||||||||| || ||||||||||    
T  32535528 aatgacaaatgttaatatgttaattgttatgttag--ctttttctccttgtcaagacttgaacc 32535467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 39162292 - 39162257
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagt 423  Q
    ||||||||||||||||||||||||||||||||||||    
T  39162292 aatggcaaatgttagtatgttaattgttatgttagt 39162257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 458
Target Start/End: Original strand, 42476976 - 42477030
Alignment:
Q  403 tatgttaattgttatgttagttctttttctccttgccaggacttgaacccttgacc 458  Q
    ||||||||||||||| |||||  |||||||||||||||||||||||||||| ||||    
T  42476976 tatgttaattgttattttagta-tttttctccttgccaggacttgaaccctggacc 42477030  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 424
Target Start/End: Complemental strand, 20692921 - 20692885
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagtt 424  Q
    |||||||||||||| ||||||||||||||||||||||    
T  20692921 aatggcaaatgttaatatgttaattgttatgttagtt 20692885  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 5135287 - 5135252
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagt 423  Q
    ||||||||||||||||||||||||||| ||||||||    
T  5135287 aatggcaaatgttagtatgttaattgtaatgttagt 5135252  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 6802098 - 6802063
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagt 423  Q
    ||||||||| ||||||||||||||||||||||||||    
T  6802098 aatggcaaacgttagtatgttaattgttatgttagt 6802063  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 451
Target Start/End: Original strand, 37379294 - 37379345
Alignment:
Q  398 gttagtatgttaattgttatgttagttctttttctccttgccaggacttgaacc 451  Q
    |||| ||||||||||||||| ||||||  |||||||||||||||||||||||||    
T  37379294 gttattatgttaattgttatattagtt--ttttctccttgccaggacttgaacc 37379345  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 453
Target Start/End: Complemental strand, 3950047 - 3949977
Alignment:
Q  388 aatggcaaatgtt----agtatgttaattgttatgttagt-tctttttctccttgccaggacttgaaccct 453  Q
    |||||||||||||    ||||||| ||||||||||||||| | ||||||||||||||| ||||||||||||    
T  3950047 aatggcaaatgttagtgagtatgtcaattgttatgttagtgtttttttctccttgccaagacttgaaccct 3949977  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 424
Target Start/End: Complemental strand, 9922241 - 9922205
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagtt 424  Q
    |||| ||||||||||||||||||||||||||||||||    
T  9922241 aatgacaaatgttagtatgttaattgttatgttagtt 9922205  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 429
Target Start/End: Complemental strand, 15873832 - 15873796
Alignment:
Q  393 caaatgttagtatgttaattgttatgttagttctttt 429  Q
    |||||||||||||||||||||||||||||||| ||||    
T  15873832 caaatgttagtatgttaattgttatgttagttttttt 15873796  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 451
Target Start/End: Complemental strand, 16469285 - 16469221
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttag-ttctttttctccttgccaggacttgaacc 451  Q
    |||| ||||| |||||| ||||||||||||||||| || |||||||| |||||| ||||||||||    
T  16469285 aatgacaaatattagtaggttaattgttatgttagtttttttttctcattgccaagacttgaacc 16469221  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 423
Target Start/End: Complemental strand, 40905858 - 40905823
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgttagt 423  Q
    |||| |||||||||||||||||||||||||||||||    
T  40905858 aatgacaaatgttagtatgttaattgttatgttagt 40905823  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 423
Target Start/End: Complemental strand, 19612267 - 19612233
Alignment:
Q  389 atggcaaatgttagtatgttaattgttatgttagt 423  Q
    ||||||||||| |||||||||||||||||||||||    
T  19612267 atggcaaatgtcagtatgttaattgttatgttagt 19612233  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 431
Target Start/End: Complemental strand, 45806209 - 45806172
Alignment:
Q  394 aaatgttagtatgttaattgttatgttagttctttttc 431  Q
    |||||||||||||||||||||||||||| || ||||||    
T  45806209 aaatgttagtatgttaattgttatgttaattatttttc 45806172  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 430
Target Start/End: Complemental strand, 37993652 - 37993615
Alignment:
Q  393 caaatgttagtatgttaattgttatgttagttcttttt 430  Q
    |||||||||||||||||||||||||||||||| |||||    
T  37993652 caaatgttagtatgttaattgttatgttagtttttttt 37993615  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 450
Target Start/End: Original strand, 10301392 - 10301446
Alignment:
Q  394 aaatgttagtatgttaattgttatgttagttctttttctccttgccaggacttgaac 450  Q
    ||||||||||||||||||| |||||||||   |||||||||||| ||| ||||||||    
T  10301392 aaatgttagtatgttaattattatgttag--atttttctccttgtcagaacttgaac 10301446  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 421
Target Start/End: Original strand, 988922 - 988955
Alignment:
Q  388 aatggcaaatgttagtatgttaattgttatgtta 421  Q
    |||||||||||||||||| |||||||||||||||    
T  988922 aatggcaaatgttagtattttaattgttatgtta 988955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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