View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6865A_low_96 (Length: 300)
Name: NF6865A_low_96
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6865A_low_96 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 29013767 - 29013487
Alignment:
| Q |
20 |
gaaatatgcataatatcagctcgtggagtaagagcatcacattcactatggaaacgtcgatggtatgctattggttgggttgatccaaccaacaaataca |
119 |
Q |
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| T |
29013767 |
gaaatatgcataatatcagctcgtggagtaagagcatcacattcactatggaaacgtcaatggtatgctattggttgggttgatccaaccaacaaataca |
29013668 |
T |
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| Q |
120 |
taaccaaagttgatgcttcaaccaacacaaaccctctttggagaacaaagttttccattcaagttgataactctgatccaaattttcatgatcttgcatt |
219 |
Q |
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| T |
29013667 |
taaccaaagttgatgcttcaaccaacacaaaccctctttggagaacaaagttttccattcaagttgataactctgatccaaattttcatgatcttgcatt |
29013568 |
T |
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| Q |
220 |
gaatgttgaagtttatagcagagacccttttttctttacagagaaacttcatggatcagctactgttcttctcaaagagtt |
300 |
Q |
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| T |
29013567 |
gaatgttgaagtttatagcagagacccttttttctttacagagaaacttcatggatcagctactgttcttctcaaagagtt |
29013487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 29366455 - 29366175
Alignment:
| Q |
20 |
gaaatatgcataatatcagctcgtggagtaagagcatcacattcactatggaaacgtcgatggtatgctattggttgggttgatccaaccaacaaataca |
119 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366455 |
gaaatatgcttaatatcagctcgaggagtaagagcatcacattcactatggaaacgtcaatggtatgctattggttgggttgatccaaccaacaaataca |
29366356 |
T |
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| Q |
120 |
taaccaaagttgatgcttcaaccaacacaaaccctctttggagaacaaagttttccattcaagttgataactctgatccaaattttcatgatcttgcatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366355 |
taaccaaagttgatgcttcaaccaacacaaaccctctttggagaacaaagttttccattcaagttgataactctgatccaaattttcatgatcttgcatt |
29366256 |
T |
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| Q |
220 |
gaatgttgaagtttatagcagagacccttttttctttacagagaaacttcatggatcagctactgttcttctcaaagagtt |
300 |
Q |
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| T |
29366255 |
gaatgttgaagtttatagcagagacccttttttctttacagagaaacttcatggatcagctactgttcttctcaaagagtt |
29366175 |
T |
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