View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6865A_low_97 (Length: 298)

Name: NF6865A_low_97
Description: NF6865A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6865A_low_97
NF6865A_low_97
[»] chr6 (1 HSPs)
chr6 (9-298)||(12686478-12686768)


Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 298
Target Start/End: Original strand, 12686478 - 12686768
Alignment:
Q  9 tggtgttcgtatccatattcgtgtttcgtagtttgtaactctacgtggattgattattgaaaaactatttcttgttgtgctctcctaaaggttcaatctg 108  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12686478 tggtgttcgtgtccatatccgtgtttcatagtttgtaactctacatggattgattattgaaaaactatttcttgttgtactctcctaaaggttcaatctg 12686577  T
Q  109 atcatcactctattctcttcacttttgatactaatgcacaaatttttccttcttcctttaaa-tttaaaagaaaaaagtggacttttcatgattattgta 207  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||     |||||||||||||||||||||||||||||    
T  12686578 atcatcactctattctcttcgcttttgatactaatgcacaaatttttccttcttcctttaaattttttttaaaaaaagtggacttttcatgattattgta 12686677  T
Q  208 aacatgtcatatattcaaagtttatttaatctgctaaactcaaagctttgaagcttattcctaagaaatggaacaaataaggttttggtga 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12686678 aacatgtcatatattcaaagtttatttaatctgctaaactcaaagctttgaagcttattcctaagaaatggaacaaataaggttttggtga 12686768  T

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