View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6866A_high_1 (Length: 790)

Name: NF6866A_high_1
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6866A_high_1
NF6866A_high_1
[»] chr1 (1 HSPs)
chr1 (22-772)||(32705919-32706669)


Alignment Details
Target: chr1 (Bit Score: 739; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 22 - 772
Target Start/End: Complemental strand, 32706669 - 32705919
Alignment:
Q  22 cagacatgtcattttctgtcagcctagacaaaggccgtggctgcgaatggggcagcagaagtttgtctggcttattcgcacagaagagaaatgcattgaa 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32706669 cagacatgtcattttctgtcagcctagacaaaggccgtggctgcgaatggggcagcagaagtttgtccggcttattcgcacagaagagaaatgcattgaa 32706570  T
Q  122 tccttatttttggcaaatgattagggaaattgtcaaattcaaagatgatgctataaggcaagtacataatcgatttatcggctgcacttacttttgctca 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32706569 tccttatttttggcaaatgattagggaaattgtcaaattcaaagatgatgctataaggcaagtacataatcgatttatcggctgcacttacttttgctca 32706470  T
Q  222 tccatagtacaagttcaatttttctgtaggtgtttgactgttagtgaactcagaaatatcaagtaatatattcaaattagattgtgctttctttctaaaa 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32706469 tccatagtacaagttcaatttttctgtaggtgtttgactgttagtgaactcagaaatatcaagtaatatattcaaattagattgtgctttctttctaaaa 32706370  T
Q  322 gatatatatcctgtgaaacaattggtatctgctgagtatggctcataatcactgataagtggacaaatgctcaagcgtagtagagaggtttttgctgcat 421  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32706369 gaaatatatcctgtgaaacaattggtatctgctgagtatggctcataatcactgataagtggacaaatgctcaagcgtagtagagaggtttttgctgcat 32706270  T
Q  422 tgtactctacaccctaagaattgcataattgagaaactatagcagtcactcaactgtcggagaatagttacaacgcgcaaaacttcatgatcaatcgttt 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32706269 tgtactctacaccctaagaattgcataattgagaaactatagcagtcactcaactgtcggagaatagttacaacgcgcaaaacttcatgatcaatcgttt 32706170  T
Q  522 gtgttcttgtgtgcgttaatttatgtgttttcattagaactgaatttgttattctaacggtgtcccataaaattattcaaagttgagtgttttcttcatg 621  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32706169 gtgttcttgtgtgcgttaatttatgtgttttcattagaactgaatttgttattctaacggtgtcccataaaattattcaaagttgagtgttttcttcatg 32706070  T
Q  622 cataattcaatttgcactcaactatgtaaaatacttcaatttggaactcaactatggaaagttgaaaattgagaagaatactactggacaacgtattgga 721  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32706069 cataattcaatttgcactcaactatgtaaaatacttcaatttggaactcaactatggaaagttgaaaattgagaagaatactactggacaacgtattgga 32705970  T
Q  722 gagaggtcttcttttcgatgtcctgaattctgagatattagttgagaacct 772  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32705969 gagaggtcttcttttcgatgtcctgaattctgatatattagttgagaacct 32705919  T

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