View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_high_2 (Length: 736)
Name: NF6866A_high_2
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 11 - 528
Target Start/End: Original strand, 52386149 - 52386661
Alignment:
| Q |
11 |
tgagaggacttctggtggaaccaagtgattctgatcctgacaatcctgataaacctcgtcgtcatggctgcaaagtcagctgcggagatgttagaaagga |
110 |
Q |
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| T |
52386149 |
tgagaggacttctgttggaaccaagtgattctgatcctgacaatcctgataaacctcgtcgtcatggctgcaaagtcagctgcggagatgttagaaagga |
52386248 |
T |
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| Q |
111 |
taacgggattctgtaacaaaattataaacatgaaatactgtatattcttataattcacttgagacatcataccaggattttgatttttcatgttgacaac |
210 |
Q |
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| T |
52386249 |
taacgggattctgtaacaaaattataaacatgaaatactgtatattcttataattcacttgagacatcataccaggattttgatttttcatgttgacaac |
52386348 |
T |
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| Q |
211 |
atccatactctgtattgttgattttatttaccatttattcatttacagtaagttaacaacattcatacttttataatcatatatatgacaggaacttcgc |
310 |
Q |
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| T |
52386349 |
atccatactctgtattgttgattttatttaccatttattcatttacagtaagttaacaacattcatacttttataatc----atatgaaaggaacttcgc |
52386444 |
T |
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| Q |
311 |
taccaatctgaaagatcaaaagttattggacgcatatgcaatggttgctataagaatttcttatcttctactaccatttaatatacttatatccaaaatc |
410 |
Q |
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| T |
52386445 |
taccaatctgaaagatcacaagttattggacgcatatgcaatggttgctataagaatttcttatctt---ctaacatttaatatacttatatccaaaatc |
52386541 |
T |
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| Q |
411 |
atctttaattaggtcccttacacattgtc--nnnnnnnnnnggtctcttacatggtttacctacagttctattgttcaataattaaaagccggatgaatt |
508 |
Q |
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| T |
52386542 |
atctttaattaggtcccttacaaattgtcaaaaaaaaaaaaggtcccttacatggtttacctacagttctattgttcaataattaaaagccggatgaatt |
52386641 |
T |
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| Q |
509 |
agtagttaaattcctctctt |
528 |
Q |
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| T |
52386642 |
agtagttaaattcctctctt |
52386661 |
T |
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