View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6866A_high_4 (Length: 580)
Name: NF6866A_high_4
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 24 - 571
Target Start/End: Complemental strand, 49653861 - 49653305
Alignment:
| Q |
24 |
ggacaccatacacgtcttca------ggtgtcgagggttacattgtacttattagagcaccagccaccaaaccatacagtgttttagtggtaagaaaagg |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49653861 |
ggacaccatacacgtcttcaatctaaggtgtcgagtgctacattgtacttattagagcaccagccaccaaaccatacagtgttttagtggtaagaaaagg |
49653762 |
T |
|
| Q |
118 |
gtaaatggaaatgacagtgattttgggtttagcaaagtaaga---tttaagacttgtaatctttccatgcatgaaatgaaaaagaactgaatagttgaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49653761 |
gtaaatggaaatgacagtgattttgggtttagcaaagtaagaagatttaagacttgtaatctttccatgcatgaaatgaaaaagaactgaatagttgaaa |
49653662 |
T |
|
| Q |
215 |
acttaagttagtttgatttataagctcagtaccatcaatgctctgaagaactttctttactttcctcctacaaccttcacagtggatagaaaccttcaag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49653661 |
acttaagttagtttgatttataagctcagtaccatcaatgctctgaagaactttctttactttcctcctacaaccttcacagtggatagaaaccttcaag |
49653562 |
T |
|
| Q |
315 |
aaccatgtctgtgaaacaaaaccaactttagcttacaaaataaaaaacaaagaaagattttgacaatagggtgtgattgttgggttgaagtaacatgtta |
414 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49653561 |
aaccatgtctgtgaaacaaaaccaagtttagcttacaaaataaaaaacaaagaaagattttgacaatagggtgtgattgttgggttgaagtaacatgtta |
49653462 |
T |
|
| Q |
415 |
cctgatacttcaaaggttgtgaggtagcatccattagagagaagtggttgggagagtgagagggaattggaaacttgaaatcaaaatgaaagtgagatga |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
49653461 |
cctgatacttcaaaggttgtgaggtagcatccattagagagaagtggttgggagagtgagagggaattggaaacttgaaatcaaaatgaaagtgagaaga |
49653362 |
T |
|
| Q |
515 |
ggaaaatgccaagaaaacaaaggaaacaagccaagatgggtaccaaagtagtataat |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49653361 |
ggaaaatgccaagaaaacaaaggaaacaagccaagatgggtaccaaagtagtataat |
49653305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 14382068 - 14382151
Alignment:
| Q |
242 |
agtaccatcaatgctctgaagaactttctttactttcctcctacaaccttcacagtggatagaaaccttcaagaaccatgtctg |
325 |
Q |
| |
|
|||||||||||||| || | |||||||||||||||| | || ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14382068 |
agtaccatcaatgcgctttaaaactttctttactttctttctgcaaccttcacagtggatagaaactttcaagaaccatgtctg |
14382151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University