View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_10 (Length: 486)
Name: NF6866A_low_10
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_10 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 16 - 486
Target Start/End: Complemental strand, 25182428 - 25181957
Alignment:
| Q |
16 |
atgcatatcaaacaaattaatcaaaaccctaccttaaaatacggaaaaaacctatcatcttccgcaatcatcgaagcaacatcctcccccggaggctgaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25182428 |
atgcatatcaaacaaattaatcaaaaccctaccttaaaatacggaaaaaacctatcatcttccgcaatcatcgaagcaacatcctcccccggaggctgaa |
25182329 |
T |
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| Q |
116 |
aatactctttagaaatcgacataaccgcattcaaaacattattaaaatgccgactaatagtctcaccggaatagtgaaacaactcttgaacacctctaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25182328 |
aatactctttagaaatcgacataaccgcattcaaaacattattaaaatgccgactaatagtctcaccggaatagtgaaacaactcttgaacacctctaat |
25182229 |
T |
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| Q |
216 |
cctcaaattatgaccaattatgaacaaaaaa-tagctaattgctcttcaattttaatcctattcgtgtcacgtaataaacccttggtttctagaatatca |
314 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25182228 |
cctcaaattatgaccaattatgaacaaaaaaatagctaattgctcttcaattttaatcctattcgtgtcacgtaataaacccttggtttctagaatatca |
25182129 |
T |
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| Q |
315 |
catagtttatagaatacgactttgtccattcggaaattttctaaacaacgttggtttggtccgttgagtacttcttcgaagaattttgtggaggttgatg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25182128 |
catagtttatagaatacgactttgtccattcggaaattttctaaacaacgttggtttggtccgttgagtacttcttcgaagaattttgtggaggttgatg |
25182029 |
T |
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| Q |
415 |
atgaacgtggggggtgttttggtatagggtttgtggtgggttcttcgtcggaggaaggcattgtggaaatgg |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25182028 |
atgaacgtggggggtgttttggtatagggtttgtggtgggttcttcgtcggaggaaggcattgtggaaatgg |
25181957 |
T |
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