View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_105 (Length: 326)
Name: NF6866A_low_105
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_105 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 7246338 - 7246474
Alignment:
| Q |
1 |
gtaatagtaagggtttaaagaagagttttgataggattgtgaaaaagattgtgactgatcatgacaagccatggatgaagtagagaaagggaaagaagaa |
100 |
Q |
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| T |
7246338 |
gtaatagtaagggtttaaagaagagttttggtaggattgtgaaaaagattgtgactgatcatgacaagccatggatgaagtagagaaagggaaagaagaa |
7246437 |
T |
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| Q |
101 |
ggtgagtttatgctgctgctgttgttgttcaaggaga |
137 |
Q |
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| T |
7246438 |
ggtgagtttatgctgctgctgttgttgttcaaggaga |
7246474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 195 - 313
Target Start/End: Original strand, 7246532 - 7246650
Alignment:
| Q |
195 |
aagaagaaactactagttccacaggctttcttgaacggtttctacctctgtgcatgtgtttgtcacagtactttgagtttggatatgcttcctttgagca |
294 |
Q |
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| T |
7246532 |
aagaagaaactactagttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagca |
7246631 |
T |
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| Q |
295 |
tctccatttcttgccatct |
313 |
Q |
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| T |
7246632 |
tctccatttcttgccatct |
7246650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 13137222 - 13137263
Alignment:
| Q |
211 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtg |
252 |
Q |
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| T |
13137222 |
ttccacaagctttcttgaacgatttcgacctctgtgcatgtg |
13137263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 211 - 313
Target Start/End: Complemental strand, 52052075 - 52051973
Alignment:
| Q |
211 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtttgtcacagtactttgagtttggatatgcttcctttgagcatctccatttcttgcca |
310 |
Q |
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| T |
52052075 |
ttccacaggctttcttgaacggtttttccctctatgcatgtgcctttcacagtactttgaatctggatatgcttcttttgaacatctccatttctttcca |
52051976 |
T |
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| Q |
311 |
tct |
313 |
Q |
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||| |
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| T |
52051975 |
tct |
52051973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 211 - 313
Target Start/End: Original strand, 18199801 - 18199903
Alignment:
| Q |
211 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtttgtcacagtactttgagtttggatatgcttcctttgagcatctccatttcttgcca |
310 |
Q |
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| T |
18199801 |
ttccacaggctttcttgaacggttttttcctctatgcatgtgtctttcacagtatttagaatctggatatgcttcttttgagcatctccatttttttcca |
18199900 |
T |
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| Q |
311 |
tct |
313 |
Q |
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||| |
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| T |
18199901 |
tct |
18199903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 42092016 - 42091957
Alignment:
| Q |
209 |
agttccacaggctttcttgaacggtttctacctctgtgcatgtgtttgtcacagtacttt |
268 |
Q |
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| T |
42092016 |
agttccacaggctttcttgaacggtttctaccacgatgcatgtgtctttcacagtacttt |
42091957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 300
Target Start/End: Complemental strand, 399189 - 399100
Alignment:
| Q |
211 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtttgtcacagtactttgagtttggatatgcttcctttgagcatctcca |
300 |
Q |
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| T |
399189 |
ttccacaggctttcttgaacggttgcggccacggtgcatgtggcgctcacagtacttggagtctgggtatgcttccttcgagcacctcca |
399100 |
T |
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