View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6866A_low_107 (Length: 324)

Name: NF6866A_low_107
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6866A_low_107
NF6866A_low_107
[»] chr2 (2 HSPs)
chr2 (204-312)||(6295433-6295541)
chr2 (6-59)||(19523308-19523361)
[»] chr1 (3 HSPs)
chr1 (8-59)||(43105216-43105267)
chr1 (6-59)||(40053017-40053070)
chr1 (6-58)||(43757698-43757750)
[»] chr7 (3 HSPs)
chr7 (123-169)||(47944982-47945028)
chr7 (123-169)||(47950412-47950458)
chr7 (123-169)||(33050183-33050228)
[»] scaffold0592 (1 HSPs)
scaffold0592 (6-59)||(1021-1074)
[»] scaffold0036 (1 HSPs)
scaffold0036 (6-59)||(54569-54622)
[»] chr4 (2 HSPs)
chr4 (6-59)||(33777005-33777058)
chr4 (124-169)||(35037609-35037653)
[»] chr3 (3 HSPs)
chr3 (6-59)||(16295575-16295628)
chr3 (123-169)||(11327108-11327153)
chr3 (123-169)||(54233494-54233539)
[»] chr5 (2 HSPs)
chr5 (123-166)||(5005105-5005148)
chr5 (134-170)||(7077379-7077414)
[»] chr8 (2 HSPs)
chr8 (123-169)||(5742683-5742728)
chr8 (9-58)||(38939102-38939151)
[»] chr6 (1 HSPs)
chr6 (123-169)||(3339525-3339570)


Alignment Details
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 204 - 312
Target Start/End: Original strand, 6295433 - 6295541
Alignment:
Q  204 gttgaaattagattctcagtagtcgtcacaatagtggccactcgattaaaattaaaatgtttagattttgatttaataaaatttaaaaccaaagattgaa 303  Q
    |||||||||||||||||  |||||||||||  ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6295433 gttgaaattagattctctatagtcgtcacatcagtggccgctcgattaagattaaaatgtttagattttgatttaataaaatttaaaaccaaagattgaa 6295532  T
Q  304 atatatatt 312  Q
    |||||||||    
T  6295533 atatatatt 6295541  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 19523308 - 19523361
Alignment:
Q  6 actattttggtacaatttctgagataagtttattgttctctctttttattggtc 59  Q
    |||||||||||||||||| ||  | || ||||||||||||||||||||||||||    
T  19523308 actattttggtacaatttttggtacaattttattgttctctctttttattggtc 19523361  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 43105267 - 43105216
Alignment:
Q  8 tattttggtacaatttctgagataagtttattgttctctctttttattggtc 59  Q
    |||||||||||||||| || || || ||||||||||||||||||||||||||    
T  43105267 tattttggtacaatttttgggacaactttattgttctctctttttattggtc 43105216  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 40053070 - 40053017
Alignment:
Q  6 actattttggtacaatttctgagataagtttattgttctctctttttattggtc 59  Q
    |||||||||||||||| | ||||| || ||| |||||||||||||| |||||||    
T  40053070 actattttggtacaatctttgagacaactttgttgttctctcttttcattggtc 40053017  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 43757750 - 43757698
Alignment:
Q  6 actattttggtacaatttctgagataagtttattgttctctctttttattggt 58  Q
    |||||||||||| ||||| ||||| || ||| |||||||||||||| ||||||    
T  43757750 actattttggtataatttttgagacaactttgttgttctctcttttcattggt 43757698  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 47945028 - 47944982
Alignment:
Q  123 gttgtacaaaggttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||| ||||||  ||||||||||||||||||||||||||||    
T  47945028 gttgtacaaaagttgtacaaaaatggtttgtacaaatatcatttctc 47944982  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 47950458 - 47950412
Alignment:
Q  123 gttgtacaaaggttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||| ||||||  ||||||||||||||||||||||||||||    
T  47950458 gttgtacaaaagttgtacaaaaatggtttgtacaaatatcatttctc 47950412  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 33050228 - 33050183
Alignment:
Q  123 gttgtacaaaggttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||| ||||| ||||||||||| ||||||||||||||||||    
T  33050228 gttgtacaaaagttgtcacaaaatggtt-gtacaaatatcatttctc 33050183  T

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Target: scaffold0592 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 1074 - 1021
Alignment:
Q  6 actattttggtacaatttctgagataagtttattgttctctctttttattggtc 59  Q
    ||||||||||||||| || |||||||| ||| |||||||||||||| |||||||    
T  1074 actattttggtacaacttttgagataactttgttgttctctcttttcattggtc 1021  T

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Target: scaffold0036 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 54569 - 54622
Alignment:
Q  6 actattttggtacaatttctgagataagtttattgttctctctttttattggtc 59  Q
    |||||||||||||||| | ||||| || ||| ||||||||||||||||||||||    
T  54569 actattttggtacaatctttgagacaactttgttgttctctctttttattggtc 54622  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 33777058 - 33777005
Alignment:
Q  6 actattttggtacaatttctgagataagtttattgttctctctttttattggtc 59  Q
    |||||||||||||||||| || |||||  || ||||||||||||||||||||||    
T  33777058 actattttggtacaatttttgggataaccttgttgttctctctttttattggtc 33777005  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 35037653 - 35037609
Alignment:
Q  124 ttgtacaaaggttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    ||||||||| |||||| |||||||||| ||||||||||||||||||    
T  35037653 ttgtacaaaagttgtatcaaaatggtt-gtacaaatatcatttctc 35037609  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 16295628 - 16295575
Alignment:
Q  6 actattttggtacaatttctgagataagtttattgttctctctttttattggtc 59  Q
    ||||||||||||||| || ||||| || ||| ||||||||||||||||||||||    
T  16295628 actattttggtacaacttttgagacaactttgttgttctctctttttattggtc 16295575  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 11327153 - 11327108
Alignment:
Q  123 gttgtacaaaggttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||| ||||| ||||||||||| ||||||||||||||||||    
T  11327153 gttgtacaaaagttgtcacaaaatggtt-gtacaaatatcatttctc 11327108  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 54233494 - 54233539
Alignment:
Q  123 gttgtacaaaggttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||||||    
T  54233494 gttgtacaaaagttgtaaaaaaatggtt-gtacaaatatcatttctc 54233539  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 5005148 - 5005105
Alignment:
Q  123 gttgtacaaaggttgtaacaaaatggtttgtacaaatatcattt 166  Q
    |||||||||| |||||| ||||||||||||| ||||||||||||    
T  5005148 gttgtacaaatgttgtaccaaaatggtttgtgcaaatatcattt 5005105  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 7077379 - 7077414
Alignment:
Q  134 gttgtaacaaaatggtttgtacaaatatcatttctcg 170  Q
    ||||||||||||||||| |||||||||||||||||||    
T  7077379 gttgtaacaaaatggtt-gtacaaatatcatttctcg 7077414  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 5742683 - 5742728
Alignment:
Q  123 gttgtacaaaggttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||| |||||| |||||||||| ||||||||||||||||||    
T  5742683 gttgtacaaaagttgtaccaaaatggtt-gtacaaatatcatttctc 5742728  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 38939102 - 38939151
Alignment:
Q  9 attttggtacaatttctgagataagtttattgttctctctttttattggt 58  Q
    ||||||||||||||| |||||||| ||| |||||||||||| | ||||||    
T  38939102 attttggtacaatttttgagataactttgttgttctctcttctcattggt 38939151  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 3339525 - 3339570
Alignment:
Q  123 gttgtacaaaggttgtaacaaaatggtttgtacaaatatcatttctc 169  Q
    |||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  3339525 gttgtacaaaagttgtcacaaaatgg-ttgtacaaatatcatttctc 3339570  T

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