View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6866A_low_108 (Length: 323)

Name: NF6866A_low_108
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6866A_low_108
NF6866A_low_108
[»] chr3 (13 HSPs)
chr3 (5-323)||(6056640-6056961)
chr3 (5-148)||(43752108-43752251)
chr3 (5-193)||(3519334-3519522)
chr3 (26-150)||(10793639-10793763)
chr3 (56-127)||(3334475-3334546)
chr3 (30-93)||(444663-444726)
chr3 (76-150)||(41355928-41356002)
chr3 (5-129)||(53635346-53635469)
chr3 (55-134)||(43491981-43492060)
chr3 (26-92)||(26618569-26618635)
chr3 (77-139)||(51466923-51466984)
chr3 (33-127)||(51683907-51684000)
chr3 (5-90)||(5323838-5323923)
[»] chr8 (8 HSPs)
chr8 (5-209)||(7503937-7504142)
chr8 (74-216)||(13446427-13446573)
chr8 (5-127)||(41643166-41643288)
chr8 (32-131)||(41894092-41894192)
chr8 (54-132)||(11539072-11539150)
chr8 (13-87)||(20684140-20684214)
chr8 (43-112)||(4141715-4141784)
chr8 (5-150)||(14921055-14921200)
[»] chr4 (8 HSPs)
chr4 (5-147)||(32007859-32008001)
chr4 (6-148)||(43159469-43159611)
chr4 (73-115)||(14008528-14008570)
chr4 (26-115)||(3516794-3516882)
chr4 (54-115)||(11166946-11167007)
chr4 (54-115)||(29236640-29236701)
chr4 (35-88)||(2933024-2933077)
chr4 (30-127)||(4928706-4928802)
[»] chr2 (9 HSPs)
chr2 (5-150)||(11116528-11116672)
chr2 (54-150)||(30393179-30393275)
chr2 (30-148)||(11673390-11673508)
chr2 (5-83)||(11116455-11116533)
chr2 (26-115)||(19546538-19546627)
chr2 (31-127)||(6298944-6299039)
chr2 (26-148)||(17793328-17793450)
chr2 (71-129)||(9385654-9385712)
chr2 (54-115)||(32973614-32973675)
[»] chr7 (10 HSPs)
chr7 (9-148)||(27035182-27035321)
chr7 (30-113)||(21820017-21820100)
chr7 (26-139)||(31446954-31447067)
chr7 (26-94)||(48841470-48841538)
chr7 (54-125)||(2916193-2916264)
chr7 (73-118)||(20878367-20878412)
chr7 (5-129)||(31078425-31078550)
chr7 (54-123)||(42597319-42597388)
chr7 (7-90)||(18442037-18442120)
chr7 (80-147)||(28761633-28761700)
[»] chr5 (6 HSPs)
chr5 (9-194)||(15521148-15521334)
chr5 (9-150)||(15515809-15515950)
chr5 (26-150)||(14570284-14570408)
chr5 (5-93)||(5069128-5069216)
chr5 (76-147)||(14791026-14791097)
chr5 (77-150)||(3744992-3745066)
[»] chr6 (20 HSPs)
chr6 (5-145)||(10385308-10385448)
chr6 (26-115)||(6120031-6120120)
chr6 (26-150)||(10121064-10121181)
chr6 (5-150)||(5764080-5764218)
chr6 (5-150)||(5767615-5767753)
chr6 (5-150)||(5771150-5771288)
chr6 (5-150)||(5774685-5774823)
chr6 (5-150)||(5778220-5778358)
chr6 (5-150)||(5781755-5781893)
chr6 (5-150)||(5785290-5785428)
chr6 (5-150)||(5788825-5788963)
chr6 (5-150)||(5792360-5792498)
chr6 (5-150)||(5795895-5796033)
chr6 (5-150)||(5799430-5799568)
chr6 (5-150)||(5802965-5803103)
chr6 (5-150)||(5806500-5806638)
chr6 (5-150)||(5810035-5810173)
chr6 (5-150)||(5813570-5813708)
chr6 (5-150)||(5817105-5817243)
chr6 (30-118)||(14944576-14944664)
[»] chr1 (16 HSPs)
chr1 (33-118)||(50399883-50399968)
chr1 (31-127)||(9302108-9302204)
chr1 (5-132)||(14614922-14615049)
chr1 (49-150)||(11021194-11021295)
chr1 (43-112)||(27222768-27222837)
chr1 (31-127)||(35843953-35844050)
chr1 (7-127)||(26515703-26515818)
chr1 (26-209)||(8287054-8287237)
chr1 (33-115)||(41151299-41151382)
chr1 (35-150)||(45059352-45059455)
chr1 (31-140)||(13017734-13017843)
chr1 (26-84)||(8904771-8904829)
chr1 (76-150)||(30518752-30518826)
chr1 (30-100)||(39329048-39329118)
chr1 (71-133)||(44725218-44725280)
chr1 (54-94)||(17985695-17985735)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 323
Target Start/End: Original strand, 6056640 - 6056961
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||||||||||||||||| | |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6056640 aaaagtttggaagacaacaattttattgttaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgagcaattgcttat 6056739  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttg-gannnnnnnncaattctttttaaatgaacattgtcaagtatgtaacc-ggcctcc 202  Q
    ||||||||||||||||||||||| |||||| |||||||||||||           |||||| ||| ||||||| ||||||||||  ||| || |||||||    
T  6056740 atatttaactacaatttaattgtctatcactataaatagtgttgattttttttttcaattcatttaaaatgaaaattgtcaagtccgtagccgggcctcc 6056839  T
Q  203 aaattgttggaaacaaccttggttaaa-aacaaaattaattaattataatgtttggacacgtgattaattaattatcatgtatttctattcatattacca 301  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6056840 aaattgttggaaacaaccttggttaaattttttttttaattaattataatgtttggacacgtgattaattaattatcatgtatttctattcatattacca 6056939  T
Q  302 tatttatgtttataatcaacaa 323  Q
    ||||||||||||||||||||||    
T  6056940 tatttatgtttataatcaacaa 6056961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 43752108 - 43752251
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||||||||||||||||| | |||||| |||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||| |||| | ||    
T  43752108 aaaagtttggaagacaacaattttactatcaattatgaattgtctataagtaaaaatctatttatttgtaggtaaaagtcatgtttgaaccattgttcat 43752207  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttg 148  Q
    |||||||| |||||||||||| | |||||| ||||||| |||||    
T  43752208 atatttaattacaatttaattatctatcactataaataatgttg 43752251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 5 - 193
Target Start/End: Original strand, 3519334 - 3519522
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    ||||||||||| |||| | | ||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||  |||| ||||    
T  3519334 aaaagtttggatgacagcaattttgctatcaattatgaattgtccataagtaaatgtctatttatatgtaggtaaaagtcatattagaagcattgtttat 3519433  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttggannnnnnnncaattctttttaaatgaacattgtcaagtatgtaa 193  Q
    ||||| |||||||| |||||||| |||||| |||||||||||||          |||||||||||||||||| ||| |||||| |||||    
T  3519434 atattgaactacaacttaattgtctatcactataaatagtgttgatttttttttcaattctttttaaatgaaaattatcaagtctgtaa 3519522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 26 - 150
Target Start/End: Complemental strand, 10793763 - 10793639
Alignment:
Q  26 tttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaatt 125  Q
    |||||| ||||||||| | | | |||| |||||||||||||||| | |||||||||||||||||||||  |||||| ||||||||||||| || ||||||    
T  10793763 tttactctcaattatgcactattcataggtaaatgtctatttatctataggtaaaagtcatgtttgaatcattgctcatatatttaactaaaacttaatt 10793664  T
Q  126 gtttatcacaataaatagtgttgga 150  Q
    |||| |||  |||||||||||||||    
T  10793663 gtttgtcatcataaatagtgttgga 10793639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 3334475 - 3334546
Alignment:
Q  56 aaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaattgt 127  Q
    |||||||||||| ||||| ||||||||| |||| ||||| |||| | |||||||||| ||||||||||||||    
T  3334475 aaatgtctatttgtttgtcggtaaaagtgatgtatgaaccattgttcatatatttaattacaatttaattgt 3334546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 444663 - 444726
Alignment:
Q  30 ctgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaa 93  Q
    |||||||||||  |||||||||| ||||||| |||||| | ||| |||||||||||||||||||    
T  444663 ctgtcaattatacattgtccataggtaaatgcctatttgtctgtcggtaaaagtcatgtttgaa 444726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 41355928 - 41356002
Alignment:
Q  76 gtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    |||||||| |||||||||  |||||| |||||||||||||||| | |||||| |||| | | |||||||||||||    
T  41355928 gtaaaagttatgtttgaatcattgctcatatatttaactacaactaaattgtctatcgccagaaatagtgttgga 41356002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 53635346 - 53635469
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    ||||||||  |||||||| | ||| ||  |||||||| |||||  ||| |||||| ||||||| |||| || ||||| |||||||||||| ||| || ||    
T  53635346 aaaagtttataagacaacaattttgctaccaattatgcattgtttataggtaaatatctatttgtttgcag-taaaaatcatgtttgaaccattactaat 53635444  T
Q  105 atatttaactacaatttaattgttt 129  Q
     ||||||||||||| | ||||||||    
T  53635445 ttatttaactacaactcaattgttt 53635469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 43491981 - 43492060
Alignment:
Q  55 taaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaattgtttatcac 134  Q
    ||||||||||||||| ||||| |||||||||| ||| ||  | | || |||||||||||||||| ||||||  |||||||    
T  43491981 taaatgtctatttatctgtagataaaagtcatatttaaattaatactcatatatttaactacaacttaattacttatcac 43492060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 26618635 - 26618569
Alignment:
Q  26 tttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttga 92  Q
    ||||||||||| |||  ||||||| ||  ||||||||||||| ||||| | ||||||||||||||||    
T  26618635 tttactgtcaactatacattgtccgtatataaatgtctatttgtttgtggctaaaagtcatgtttga 26618569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 51466923 - 51466984
Alignment:
Q  77 taaaagtcatgtttgaacaattgcttatatatttaactacaatttaattgtttatcacaataa 139  Q
    |||||||| ||||| ||| ||||||||||||||| ||||||||||| |||| |||||| ||||    
T  51466923 taaaagtcgtgtttaaaccattgcttatatattt-actacaatttagttgtctatcactataa 51466984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 127
Target Start/End: Original strand, 51683907 - 51684000
Alignment:
Q  33 tcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaattgt 127  Q
    |||||| || |||||| |||  |||||| |||||||| |||||||||||||||| ||| ||  |||| | ||| |||||||||||| ||||||||    
T  51683907 tcaattgtgcattgtctatagataaatgcctatttatctgtaggtaaaagtcatattt-aatcattgttcatacatttaactacaacttaattgt 51684000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 5323923 - 5323838
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgttt 90  Q
    |||||| || |||| ||| | |||||||| ||||||| ||||||  || |||||||||||| |   ||||||||||||||||||||    
T  5323923 aaaagtctgaaagataacaattttactgttaattatgcattgtcagtaggtaaatgtctatatgcatgtaggtaaaagtcatgttt 5323838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 7503937 - 7504142
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||||| ||||||||| | | ||||| |||||||||| ||| ||| ||||||||||| ||||||| ||||||||||| |||||||||||| |||||| ||    
T  7503937 aaaagtatggaagacatcaattttaccgtcaattatgcattatccttaagtaaatgtttatttatctgtaggtaaaaatcatgtttgaaccattgctcat 7504036  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttggannnnnnnncaattctttttaaatgaacattgtcaagtatgtaacc-ggcctcca 203  Q
    |||||||||||||| |||||||| | |||| |||||||||||||||        ||||| |||||||||||| |||||||||| ||||||| |||||||     
T  7504037 atatttaactacaacttaattgtctgtcaccataaatagtgttggattttttttcaattatttttaaatgaaaattgtcaagtctgtaaccgggcctccg 7504136  T
Q  204 aattgt 209  Q
    ||||||    
T  7504137 aattgt 7504142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 13446427 - 13446573
Alignment:
Q  74 aggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaattgtttatcacaataaatagtgttgga----nnnnnnnncaattcttttt 169  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||  ||||||||||||||            |||||||||||    
T  13446427 aggtaaaaatcatgtttgaaccattgcttatatatttaactacaatttaattgtctatcactgtaaatagtgttggattttttttctttcaattcttttt 13446526  T
Q  170 aaatgaacattgtcaagtatgtaaccggcctccaaattgttggaaac 216  Q
    ||| ||| |||||||||| ||||||||||||||||||||| ||||||    
T  13446527 aaacgaaaattgtcaagtctgtaaccggcctccaaattgtcggaaac 13446573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 41643166 - 41643288
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    ||||||||  |||||||| | ||| || ||||||||| |||| ||||| |||||||||| ||| | |||||||||||||||||||| ||| |||||| ||    
T  41643166 aaaagttttaaagacaactattttgctatcaattatgcattgcccatatgtaaatgtctctttgtatgtaggtaaaagtcatgtttaaactattgctcat 41643265  T
Q  105 atatttaactacaatttaattgt 127  Q
    |||||||||||||| ||| ||||    
T  41643266 atatttaactacaacttagttgt 41643288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 41894092 - 41894192
Alignment:
Q  32 gtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaag-tcatgtttgaacaattgcttatatatttaactacaatttaattgttta 130  Q
    |||||||||  ||||||||||||||||||||||||| | | |||||||||| | |||||| ||| ||||||  |||||||||||| ||| || |||||||    
T  41894092 gtcaattatacattgtccataagtaaatgtctatttgtctataggtaaaagtttatgtttaaaccattgctcttatatttaactaaaatgtagttgttta 41894191  T
Q  131 t 131  Q
    |    
T  41894192 t 41894192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 11539150 - 11539072
Alignment:
Q  54 gtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaattgtttatc 132  Q
    ||||| |||||||| ||||||  |||||||||||||||||| | |||| ||||||||||||| || |||||| ||||||    
T  11539150 gtaaaagtctatttgtttgtatataaaagtcatgtttgaaccaatgctcatatatttaactataacttaattatttatc 11539072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 20684140 - 20684214
Alignment:
Q  13 ggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatg 87  Q
    |||||||||| | ||||||| |||||||| ||||| |||| |||||||||||||||| ||||| ||||| |||||    
T  20684140 ggaagacaacaattttactgccaattatgcattgttcataggtaaatgtctatttatctgtagataaaaatcatg 20684214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 4141784 - 4141715
Alignment:
Q  43 attgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaa 112  Q
    |||||||||| ||||||||| |||| | | | | |||||||||||||| ||||||||||| |||||||||    
T  4141784 attgtccataggtaaatgtcaatttgtctatggataaaagtcatgtttaaacaattgcttttatatttaa 4141715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 14921055 - 14921200
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||||||||||||||||| | ||| |  ||||||||  ||| |||| | |||| |||||| || | | ||||||||||| ||||||||| |  |||| ||    
T  14921055 aaaagtttggaagacaacaattttgccatcaattattcattttccacatgtaagtgtctaattgtctataggtaaaagtaatgtttgaagatatgctcat 14921154  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    ||||| |||| ||  |||||| |||||||   ||||| ||||||||    
T  14921155 atattcaactgcagcttaattatttatcattgtaaatggtgttgga 14921200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 5 - 147
Target Start/End: Complemental strand, 32008001 - 32007859
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||||||||||| ||| | | ||| |||||||||||||||||||||||||||||  |||||||||  ||||||||||||||||||||||| ||| |||||    
T  32008001 aaaagtttggaaaacatcaattttgctgtcaattatgaattgtccataagtaaagatctatttatccgtaggtaaaagtcatgtttgaactatttcttat 32007902  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgtt 147  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||    
T  32007901 atatttaactacaatttaattgtctatcactataaacagtgtt 32007859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 43159469 - 43159611
Alignment:
Q  6 aaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttata 105  Q
    |||||||| ||||  || |||||  |||||||||||||||||| |||||||||||| |||||||  ||| ||||||||||||||||||| ||| ||||||    
T  43159469 aaagtttgtaagatgacaactttgttgtcaattatgaattgtctataagtaaatgtttatttatccgtaagtaaaagtcatgtttgaactattacttata 43159568  T
Q  106 tatttaactacaatttaattgtttatcacaataaatagtgttg 148  Q
    |||||||| |||| |||||||  |||||| |||||||||||||    
T  43159569 tatttaaccacaacttaattgcctatcactataaatagtgttg 43159611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 14008528 - 14008570
Alignment:
Q  73 taggtaaaagtcatgtttgaacaattgcttatatatttaacta 115  Q
    |||||||||||||||||||||| |||||| |||||||||||||    
T  14008528 taggtaaaagtcatgtttgaactattgctcatatatttaacta 14008570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 3516882 - 3516794
Alignment:
Q  26 tttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaacta 115  Q
    |||| ||||||||||  ||| ||| || ||||||||||||||||| || ||||||| | |||||||||| ||||||  ||||||||||||    
T  3516882 tttattgtcaattatacattctccgtaggtaaatgtctatttattggt-ggtaaaaattatgtttgaaccattgctcgtatatttaacta 3516794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 11167007 - 11166946
Alignment:
Q  54 gtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaacta 115  Q
    ||||||||| ||||||  || ||||||| |||||||||||| |||||| |||||||||||||    
T  11167007 gtaaatgtccatttatccgtgggtaaaattcatgtttgaaccattgctgatatatttaacta 11166946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 29236640 - 29236701
Alignment:
Q  54 gtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaacta 115  Q
    |||||||||||||| | ||| |||||||||||||||||||| ||||||  ||||||| ||||    
T  29236640 gtaaatgtctatttttatgtgggtaaaagtcatgtttgaaccattgctcgtatattttacta 29236701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 2933024 - 2933077
Alignment:
Q  35 aattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgt 88  Q
    ||||||| ||| | ||||| ||||||||||||||| | ||||||||||||||||    
T  2933024 aattatgcattatacataactaaatgtctatttatctataggtaaaagtcatgt 2933077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 4928706 - 4928802
Alignment:
Q  30 ctgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaattgt 127  Q
    |||||||||||| |||||| |||  ||| ||||||||| |||||| |||||||||||  || |||  ||||| ||||| |||||||||| ||| ||||    
T  4928706 ctgtcaattatgcattgtctatagataa-tgtctatttgtttgtaagtaaaagtcatccttaaacggttgctaatatagttaactacaacttagttgt 4928802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 11116528 - 11116672
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||||||||||||||||| | ||| ||||||||| | ||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||    
T  11116528 aaaagtttggaagacaacaattttcctgtcaattttaaattg-ccataagtaaatgtctatttatctgtaggtaaaagtcatgtttgaactattccttat 11116626  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    ||||||||  | ||||| |||||||||||| || ||||||||||||    
T  11116627 atatttaataataatttgattgtttatcaccatcaatagtgttgga 11116672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 30393179 - 30393275
Alignment:
Q  54 gtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    |||||||||||||| ||||||| |||||||||||||||||| | |||| ||||||||||| |||| |||||| |||||||| |||| ||||||||||    
T  30393179 gtaaatgtctatttgtttgtagataaaagtcatgtttgaaccaatgctaatatatttaaccacaaattaattatttatcactataagtagtgttgga 30393275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 148
Target Start/End: Complemental strand, 11673508 - 11673390
Alignment:
Q  30 ctgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaa-caattgcttatatatttaactacaatttaattgtt 128  Q
    |||||||||||| ||| |||||||||||||||||| | || | ||||||||||||||||||||| |||||| | |||||||||||||||| |||||||      
T  11673508 ctgtcaattatgcattatccataagtaaatgtctactaatctataggtaaaagtcatgtttgaaccaattg-tcatatatttaactacaacttaattggc 11673410  T
Q  129 tatcacaataaatagtgttg 148  Q
    |||||  |||||||||||||    
T  11673409 tatcattataaatagtgttg 11673390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 11116455 - 11116533
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagt 83  Q
    |||||||||||||||||| | ||| |||| ||||||||||||| |||||||||| ||||||||||  ||||||||||||    
T  11116455 aaaagtttggaagacaacaattttgctgtgaattatgaattgtacataagtaaaggtctatttatccgtaggtaaaagt 11116533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 19546627 - 19546538
Alignment:
Q  26 tttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaacta 115  Q
    |||||||||||||||  |||||||||| |||||||| ||||| | ||| |||||||||||||||| ||| ||||||  ||||||||||||    
T  19546627 tttactgtcaattatacattgtccataggtaaatgtatatttgtctgttggtaaaagtcatgtttaaaccattgctcgtatatttaacta 19546538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 6299039 - 6298944
Alignment:
Q  31 tgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaattgt 127  Q
    ||||||||||| ||||| || |  |||||||| |||||| |||||||||||||||| ||| ||| ||| || ||||||||||||| |||||| ||||    
T  6299039 tgtcaattatgcattgttcaaagataaatgtc-atttatctgtaggtaaaagtcatatttaaaccattactcatatatttaactataatttagttgt 6298944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 17793328 - 17793450
Alignment:
Q  26 tttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaatt 125  Q
    |||||||||||||||  ||  |||||| |||||||| | ||| ||||  || | ||||||||||||||| ||||||  |||||||||||| ||| ||| |    
T  17793328 tttactgtcaattatacataatccatatgtaaatgtttgtttgtttggcggcataagtcatgtttgaactattgctcgtatatttaactagaatgtaaat 17793427  T
Q  126 gtttatcacaataaatagtgttg 148  Q
    |||| ||||  ||| ||||||||    
T  17793428 gtttgtcactctaagtagtgttg 17793450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 129
Target Start/End: Original strand, 9385654 - 9385712
Alignment:
Q  71 tgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaattgttt 129  Q
    |||||||||||||||| | | ||||||| |||||||||||||| | |||||| ||||||    
T  9385654 tgtaggtaaaagtcatatataaacaattacttatatatttaaccataatttagttgttt 9385712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 32973614 - 32973675
Alignment:
Q  54 gtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaacta 115  Q
    ||||||||||||||   | | |||||||||  ||||||||| ||||||||||||||||||||    
T  32973614 gtaaatgtctatttgcctatgggtaaaagttttgtttgaaccattgcttatatatttaacta 32973675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 27035182 - 27035321
Alignment:
Q  9 gtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatat 108  Q
    ||||||||||||||   |||  |||||||||||||||||||||||||||| ||  ||||||   |||||||||||||||||||||| |||||||||||||    
T  27035182 gtttggaagacaacatttttgttgtcaattatgaattgtccataagtaaaggttaatttatccataggtaaaagtcatgtttgaaccattgcttatatat 27035281  T
Q  109 ttaactacaatttaattgtttatcacaataaatagtgttg 148  Q
    |||||||||| |||||||| |||||| |||||||||||||    
T  27035282 ttaactacaacttaattgtctatcactataaatagtgttg 27035321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 21820017 - 21820100
Alignment:
Q  30 ctgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaac 113  Q
    |||||||||||| ||||| |||||||||||||||||||||   |||||||||||||||||||||| ||| ||| || |||||||    
T  21820017 ctgtcaattatgcattgtacataagtaaatgtctatttatcaataggtaaaagtcatgtttgaactatttcttgtacatttaac 21820100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 31447067 - 31446954
Alignment:
Q  26 tttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaatt 125  Q
    |||| ||||||||||| ||||||||| | ||||||||||||| | |||| ||||||||||| ||||||  |||  | |||||||||||||||| ||| ||    
T  31447067 tttattgtcaattatgcattgtccatgaataaatgtctatttgtgtgtaagtaaaagtcatatttgaatcattattcatatatttaactacaacttagtt 31446968  T
Q  126 gtttatcacaataa 139  Q
    |||| |||| ||||    
T  31446967 gtttgtcactataa 31446954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 48841470 - 48841538
Alignment:
Q  26 tttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaac 94  Q
    |||| ||||||||||| ||||| ||||| ||||||||||||| ||||||||||| |||||| |||||||    
T  48841470 tttagtgtcaattatgcattgttcataaataaatgtctatttgtttgtaggtaagagtcatatttgaac 48841538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 2916264 - 2916193
Alignment:
Q  54 gtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaatt 125  Q
    |||||||||||||| | ||||| |||||||||||||||||| | | || |||||||||||||||| ||||||    
T  2916264 gtaaatgtctatttgtctgtagataaaagtcatgtttgaaccaattctcatatatttaactacaacttaatt 2916193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 20878412 - 20878367
Alignment:
Q  73 taggtaaaagtcatgtttgaacaattgcttatatatttaactacaa 118  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||    
T  20878412 taggtaaaagtcatgtttgaaccattgctcatatatttaactacaa 20878367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 31078550 - 31078425
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgctta- 103  Q
    |||||| ||||||||||| | |||  ||||||||||| ||||| |||| | |||||||||||| ||||||||||||| || ||| |  || |||| | |     
T  31078550 aaaagtctggaagacaacaattttgttgtcaattatgcattgttcataggaaaatgtctatttgtttgtaggtaaaaatcgtgtgtttactattgttcat 31078451  T
Q  104 tatatttaactacaatttaattgttt 129  Q
    ||||||||||||||| ||| ||||||    
T  31078450 tatatttaactacaacttagttgttt 31078425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 42597319 - 42597388
Alignment:
Q  54 gtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaa 123  Q
    ||||||||||||||   ||||| |||||||||||||||||| | |||| |||||||||| ||||| ||||    
T  42597319 gtaaatgtctatttgactgtagataaaagtcatgtttgaaccaatgctaatatatttaattacaacttaa 42597388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 18442037 - 18442120
Alignment:
Q  7 aagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgttt 90  Q
    ||||||| |||||||| | |||  ||| ||||||| |||||  |||  ||||||||||||||| |||||||||||| |||||||    
T  18442037 aagtttgaaagacaacaattttgttgtaaattatgcattgtttatagataaatgtctatttatatgtaggtaaaagccatgttt 18442120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 28761700 - 28761633
Alignment:
Q  80 aagtcatgtttgaacaattgcttatatatttaactacaatttaattgtttatcacaataaatagtgtt 147  Q
    ||||| ||||||||  |||| ||||||||||||||| |||||| |||||| |||| |||||| |||||    
T  28761700 aagtcgtgtttgaagcattgtttatatatttaactataatttagttgtttgtcactataaatggtgtt 28761633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 9 - 194
Target Start/End: Original strand, 15521148 - 15521334
Alignment:
Q  9 gtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatat 108  Q
    |||||||||||||| | | |  ||||||||||||||||||||||||||||  |||||||||   ||| ||||||||||||||||||  ||||||||||||    
T  15521148 gtttggaagacaacaattatgatgtcaattatgaattgtccataagtaaagatctatttatccttagctaaaagtcatgtttgaacccttgcttatatat 15521247  T
Q  109 ttaactacaatttaattgtttatcacaataaatagtgttgga-nnnnnnnncaattctttttaaatgaacattgtcaagtatgtaac 194  Q
    ||||||||||||||||||| ||| || ||||| |||||||||         |||||||||||||||||| |||||||||| ||||||    
T  15521248 ttaactacaatttaattgtctattactataaacagtgttggattttttttacaattctttttaaatgaaaattgtcaagtctgtaac 15521334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 15515809 - 15515950
Alignment:
Q  9 gtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatat 108  Q
    |||||||||||||| | | | ||||||||||||||||||||||||||||| ||||||||||  |||  |||||||||||||| |||  ||||||||||||    
T  15515809 gtttggaagacaacaattatgctgtcaattatgaattgtccataagtaaaggtctatttatccgtaactaaaagtcatgtttaaacccttgcttatatat 15515908  T
Q  109 ttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    ||||||| ||||||||||| ||| || |||||  ||||||||    
T  15515909 ttaactaaaatttaattgtctattactataaacggtgttgga 15515950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 14570284 - 14570408
Alignment:
Q  26 tttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaatt 125  Q
    |||||||||||||||| ||| | ||| ||||||||||||||| | ||||||||||||| |||||||||  |||||| ||||||| |||||||| ||||||    
T  14570284 tttactgtcaattatgcattattcatgagtaaatgtctatttttatgtaggtaaaagttatgtttgaatcattgctcatatattgaactacaacttaatt 14570383  T
Q  126 gtttatcacaataaatagtgttgga 150  Q
    |||| |||| |||||||||||||||    
T  14570384 gtttgtcaccataaatagtgttgga 14570408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 5069128 - 5069216
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaa 93  Q
    ||||||||| ||||| || | |||  ||||||||||| ||||| |||   ||||||| ||||| |||||| ||||||||||||||||||    
T  5069128 aaaagtttgaaagactacaattttgttgtcaattatgcattgttcatggataaatgtttatttgtttgtatgtaaaagtcatgtttgaa 5069216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 14791026 - 14791097
Alignment:
Q  76 gtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaattgtttatcacaataaatagtgtt 147  Q
    ||||||||| ||||||||| | |||||||||||||||||| || |||||  ||||||||  ||||| |||||    
T  14791026 gtaaaagtcgtgtttgaaccaatgcttatatatttaactaaaacttaatcatttatcactttaaatggtgtt 14791097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 3745066 - 3744992
Alignment:
Q  77 taaaagtcatgtttgaa-caattgcttatatatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    ||||| ||||||||||| || || || |||||||||||||||| |||||||| ||| |  |||||||||||||||    
T  3745066 taaaaatcatgtttgaatcatttactcatatatttaactacaacttaattgtctatgaatataaatagtgttgga 3744992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 10385448 - 10385308
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||||||||||||||| | | |||  |||||||||||||||||||||||||||| |||||||| |  ||||||||||||||||||||||| |||  ||||    
T  10385448 aaaagtttggaagacagcaattttgttgtcaattatgaattgtccataagtaaaggtctatttgtccgtaggtaaaagtcatgtttgaaccattatttat 10385349  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtg 145  Q
    |||||||||||||| |||||||| ||| ||  |||||||||    
T  10385348 atatttaactacaacttaattgtctataactgtaaatagtg 10385308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 6120120 - 6120031
Alignment:
Q  26 tttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaacta 115  Q
    |||||||||||||||  ||| ||| |  ||||||||||| ||| |||| |||||||||||||||||||| ||||||| ||||||||||||    
T  6120120 tttactgtcaattatacattatccgtcggtaaatgtctaattagttgtgggtaaaagtcatgtttgaaccattgcttgtatatttaacta 6120031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 150
Target Start/End: Complemental strand, 10121181 - 10121064
Alignment:
Q  26 tttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaatt 125  Q
    |||| ||||||||||| ||| | ||||||||||| ||||||| |||||||||||      ||||||||  |||||| |||||||||||||||| ||||||    
T  10121181 tttattgtcaattatgtattattcataagtaaatatctattt-tttgtaggtaa------tgtttgaatcattgctcatatatttaactacaacttaatt 10121089  T
Q  126 gtttatcacaataaatagtgttgga 150  Q
    || | |||| |||||||||||||||    
T  10121088 gtctgtcaccataaatagtgttgga 10121064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 5764218 - 5764080
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||| |||| |||||||| | ||| ||||||||||||||||||| ||||||||| ||||||| |       |||||| |||||||||||| |||| || |    
T  5764218 aaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctattca-------gtaaaaatcatgtttgaactattgtttgt 5764126  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    |||||||||| ||| |||| ||| |||||| || ||||||| ||||    
T  5764125 atatttaactgcaacttaaatgtctatcactattaatagtgctgga 5764080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 5767753 - 5767615
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||| |||| |||||||| | ||| ||||||||||||||||||| ||||||||| ||||||| |       |||||| |||||||||||| |||| || |    
T  5767753 aaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctattca-------gtaaaaatcatgtttgaactattgtttgt 5767661  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    |||||||||| ||| |||| ||| |||||| || ||||||| ||||    
T  5767660 atatttaactgcaacttaaatgtctatcactattaatagtgctgga 5767615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 5771288 - 5771150
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||| |||| |||||||| | ||| ||||||||||||||||||| ||||||||| ||||||| |       |||||| |||||||||||| |||| || |    
T  5771288 aaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctattca-------gtaaaaatcatgtttgaactattgtttgt 5771196  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    |||||||||| ||| |||| ||| |||||| || ||||||| ||||    
T  5771195 atatttaactgcaacttaaatgtctatcactattaatagtgctgga 5771150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 5774823 - 5774685
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||| |||| |||||||| | ||| ||||||||||||||||||| ||||||||| ||||||| |       |||||| |||||||||||| |||| || |    
T  5774823 aaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctattca-------gtaaaaatcatgtttgaactattgtttgt 5774731  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    |||||||||| ||| |||| ||| |||||| || ||||||| ||||    
T  5774730 atatttaactgcaacttaaatgtctatcactattaatagtgctgga 5774685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 5778358 - 5778220
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||| |||| |||||||| | ||| ||||||||||||||||||| ||||||||| ||||||| |       |||||| |||||||||||| |||| || |    
T  5778358 aaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctattca-------gtaaaaatcatgtttgaactattgtttgt 5778266  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    |||||||||| ||| |||| ||| |||||| || ||||||| ||||    
T  5778265 atatttaactgcaacttaaatgtctatcactattaatagtgctgga 5778220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 5781893 - 5781755
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||| |||| |||||||| | ||| ||||||||||||||||||| ||||||||| ||||||| |       |||||| |||||||||||| |||| || |    
T  5781893 aaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctattca-------gtaaaaatcatgtttgaactattgtttgt 5781801  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    |||||||||| ||| |||| ||| |||||| || ||||||| ||||    
T  5781800 atatttaactgcaacttaaatgtctatcactattaatagtgctgga 5781755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 5785428 - 5785290
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||| |||| |||||||| | ||| ||||||||||||||||||| ||||||||| ||||||| |       |||||| |||||||||||| |||| || |    
T  5785428 aaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctattca-------gtaaaaatcatgtttgaactattgtttgt 5785336  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    |||||||||| ||| |||| ||| |||||| || ||||||| ||||    
T  5785335 atatttaactgcaacttaaatgtctatcactattaatagtgctgga 5785290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 5788963 - 5788825
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||| |||| |||||||| | ||| ||||||||||||||||||| ||||||||| ||||||| |       |||||| |||||||||||| |||| || |    
T  5788963 aaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctattca-------gtaaaaatcatgtttgaactattgtttgt 5788871  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    |||||||||| ||| |||| ||| |||||| || ||||||| ||||    
T  5788870 atatttaactgcaacttaaatgtctatcactattaatagtgctgga 5788825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 5792498 - 5792360
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||| |||| |||||||| | ||| ||||||||||||||||||| ||||||||| ||||||| |       |||||| |||||||||||| |||| || |    
T  5792498 aaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctattca-------gtaaaaatcatgtttgaactattgtttgt 5792406  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    |||||||||| ||| |||| ||| |||||| || ||||||| ||||    
T  5792405 atatttaactgcaacttaaatgtctatcactattaatagtgctgga 5792360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 5796033 - 5795895
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||| |||| |||||||| | ||| ||||||||||||||||||| ||||||||| ||||||| |       |||||| |||||||||||| |||| || |    
T  5796033 aaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctattca-------gtaaaaatcatgtttgaactattgtttgt 5795941  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    |||||||||| ||| |||| ||| |||||| || ||||||| ||||    
T  5795940 atatttaactgcaacttaaatgtctatcactattaatagtgctgga 5795895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 5799568 - 5799430
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||| |||| |||||||| | ||| ||||||||||||||||||| ||||||||| ||||||| |       |||||| |||||||||||| |||| || |    
T  5799568 aaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctattca-------gtaaaaatcatgtttgaactattgtttgt 5799476  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    |||||||||| ||| |||| ||| |||||| || ||||||| ||||    
T  5799475 atatttaactgcaacttaaatgtctatcactattaatagtgctgga 5799430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 5803103 - 5802965
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||| |||| |||||||| | ||| ||||||||||||||||||| ||||||||| ||||||| |       |||||| |||||||||||| |||| || |    
T  5803103 aaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctattca-------gtaaaaatcatgtttgaactattgtttgt 5803011  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    |||||||||| ||| |||| ||| |||||| || ||||||| ||||    
T  5803010 atatttaactgcaacttaaatgtctatcactattaatagtgctgga 5802965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 5806638 - 5806500
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||| |||| |||||||| | ||| ||||||||||||||||||| ||||||||| ||||||| |       |||||| |||||||||||| |||| || |    
T  5806638 aaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctattca-------gtaaaaatcatgtttgaactattgtttgt 5806546  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    |||||||||| ||| |||| ||| |||||| || ||||||| ||||    
T  5806545 atatttaactgcaacttaaatgtctatcactattaatagtgctgga 5806500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 5810173 - 5810035
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||| |||| |||||||| | ||| ||||||||||||||||||| ||||||||| ||||||| |       |||||| |||||||||||| |||| || |    
T  5810173 aaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctattca-------gtaaaaatcatgtttgaactattgtttgt 5810081  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    |||||||||| ||| |||| ||| |||||| || ||||||| ||||    
T  5810080 atatttaactgcaacttaaatgtctatcactattaatagtgctgga 5810035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 5813708 - 5813570
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||| |||| |||||||| | ||| ||||||||||||||||||| ||||||||| ||||||| |       |||||| |||||||||||| |||| || |    
T  5813708 aaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctattca-------gtaaaaatcatgtttgaactattgtttgt 5813616  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    |||||||||| ||| |||| ||| |||||| || ||||||| ||||    
T  5813615 atatttaactgcaacttaaatgtctatcactattaatagtgctgga 5813570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 5817243 - 5817105
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||| |||| |||||||| | ||| ||||||||||||||||||| ||||||||| ||||||| |       |||||| |||||||||||| |||| || |    
T  5817243 aaaaatttgaaagacaacaattttgctgtcaattatgaattgtcaataagtaaaggtctattca-------gtaaaaatcatgtttgaactattgtttgt 5817151  T
Q  105 atatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    |||||||||| ||| |||| ||| |||||| || ||||||| ||||    
T  5817150 atatttaactgcaacttaaatgtctatcactattaatagtgctgga 5817105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 14944576 - 14944664
Alignment:
Q  30 ctgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaa 118  Q
    |||| ||||||| ||||| |||   ||||||| ||||| | | ||||| ||||| |||||||||| ||||||  |||||||||||||||    
T  14944576 ctgttaattatgtattgtacattgataaatgtttatttgtctttaggttaaagtaatgtttgaaccattgctcttatatttaactacaa 14944664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 50399968 - 50399883
Alignment:
Q  33 tcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaa 118  Q
    |||||||| |||| |||||| |||||||||||||| | ||||| ||||| ||||||| |||| |||||| ||||||||||||||||    
T  50399968 tcaattataaattatccataggtaaatgtctatttttctgtagataaaaatcatgttagaaccattgctcatatatttaactacaa 50399883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 9302108 - 9302204
Alignment:
Q  31 tgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaattgt 127  Q
    ||||||||||  |||||| ||| ||||||||   ||| ||||||||||||||| |||||||||||||||||  ||||||| ||||||| ||||||||    
T  9302108 tgtcaattatccattgtctataggtaaatgttcgtttctttgtaggtaaaagttatgtttgaacaattgctagtatatttcactacaacttaattgt 9302204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 14614922 - 14615049
Alignment:
Q  5 aaaagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttat 104  Q
    |||||| ||||||||||| | |||   |||||||||  ||| |||||| |||| |||||| || | ||||||||||||||||||| || ||  || | ||    
T  14614922 aaaagtatggaagacaacaattttgtcgtcaattattcattatccatatgtaagtgtctaattgtctgtaggtaaaagtcatgttcgagcatatgttcat 14615021  T
Q  105 atatttaactacaatttaattgtttatc 132  Q
    ||||||||||||||||||||| ||||||    
T  14615022 atatttaactacaatttaattatttatc 14615049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 11021295 - 11021194
Alignment:
Q  49 cataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaattgtttatcacaataaatagtgttg 148  Q
    ||||||||||| |||||| || ||||||||||| || ||||||||  ||| || | |||||||||||||||||||| || | |||| ||||||||| |||    
T  11021295 cataagtaaatatctattcatctgtaggtaaaaatcttgtttgaatcattactcacatatttaactacaatttaatcgtctgtcaccataaatagtattg 11021196  T
Q  149 ga 150  Q
    ||    
T  11021195 ga 11021194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 27222837 - 27222768
Alignment:
Q  43 attgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaa 112  Q
    ||||||||||| ||||||||||||||||| || ||||| ||||||||||||| ||| || ||||||||||    
T  27222837 attgtccataaataaatgtctatttatttataagtaaatgtcatgtttgaaccattactcatatatttaa 27222768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 35843953 - 35844050
Alignment:
Q  31 tgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaact-acaatttaattgt 127  Q
    ||||||||||  |||||  |||| ||||| ||||||| ||||||||||||||| | |||||||| ||||||| ||||||||||| |||| ||||||||    
T  35843953 tgtcaattatacattgtatataaataaatatctatttgtttgtaggtaaaagtaacgtttgaacgattgcttgtatatttaactaacaacttaattgt 35844050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 26515703 - 26515818
Alignment:
Q  7 aagtttggaagacaacgactttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatat 106  Q
    ||||||| |||||||| | |||  ||||||||||| ||||||||||  || ||| |||||| |      ||||||||||||||||||| |||| ||||||    
T  26515703 aagtttgaaagacaacaattttgttgtcaattatgcattgtccatagatacatggctatttgtc-----gtaaaagtcatgtttgaaccattgtttatat 26515797  T
Q  107 atttaactacaatttaattgt 127  Q
    |||||||||||||||| ||||    
T  26515798 atttaactacaatttagttgt 26515818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 209
Target Start/End: Original strand, 8287054 - 8287237
Alignment:
Q  26 tttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaatt 125  Q
    |||| |||||||||||   | ||| ||||||||||| ||||||| | |||||||| ||||||||| ||  |||  | |||||||| ||||||| ||||||    
T  8287054 tttagtgtcaattatgccgtctccttaagtaaatgtttatttatctataggtaaaggtcatgtttaaatcattagtcatatatttgactacaacttaatt 8287153  T
Q  126 gtttatcacaataaatagtgttggannnnnnnncaattctttttaaatgaacattgtcaagtatgtaacc-ggcctccaaattgt 209  Q
    || | || | |||||||||||||||        ||||| |||||||||||| |||||||| | ||||||| ||||||| ||||||    
T  8287154 gtctgtcgccataaatagtgttgga-tttttttcaattatttttaaatgaaaattgtcaaatttgtaaccaggcctccgaattgt 8287237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 41151299 - 41151382
Alignment:
Q  33 tcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaa-caattgcttatatatttaacta 115  Q
    ||||||||  ||||||| || |||||||||||||| ||||| ||||||||| ||||||||| || |||||| ||||||||||||    
T  41151299 tcaattatacattgtccgtaggtaaatgtctatttgtttgtgggtaaaagttatgtttgaaccatttgcttgtatatttaacta 41151382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 150
Target Start/End: Complemental strand, 45059455 - 45059352
Alignment:
Q  35 aattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaattgtttatcac 134  Q
    ||||||||||||| |||||||||| || |||||||   |||||||||||||||||||            ||||||||||||||| |||||||| ||||||    
T  45059455 aattatgaattgttcataagtaaaggtttatttatccataggtaaaagtcatgtttg------------tatatttaactacaacttaattgtctatcac 45059368  T
Q  135 aataaatagtgttgga 150  Q
     ||||||| |||||||    
T  45059367 tataaataatgttgga 45059352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 13017843 - 13017734
Alignment:
Q  31 tgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaattgttta 130  Q
    ||||||||| | | ||||||||  |||||||||||||   ||||| |||||||  ||||||||   |||||||||||||||||||||| ||| |||| |     
T  13017843 tgtcaattaggcactgtccatagataaatgtctatttgactgtagataaaagtagtgtttgaatcgttgcttatatatttaactacaacttagttgtatg 13017744  T
Q  131 tcacaataaa 140  Q
    |||| |||||    
T  13017743 tcactataaa 13017734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 8904771 - 8904829
Alignment:
Q  26 tttactgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtc 84  Q
    ||||| |||||||||| ||| |||||| |||||||||||||| | ||| ||||||||||    
T  8904771 tttaccgtcaattatgcattatccataggtaaatgtctatttgtctgtgggtaaaagtc 8904829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 30518752 - 30518826
Alignment:
Q  76 gtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaattgtttatcacaataaatagtgttgga 150  Q
    ||||||||||||||||||| | | || ||||| |||||||||| |||||| ||||| || |||| | ||||||||    
T  30518752 gtaaaagtcatgtttgaaccaatactcatataattaactacaacttaattatttataactataagtggtgttgga 30518826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 39329118 - 39329048
Alignment:
Q  30 ctgtcaattatgaattgtccataagtaaatgtctatttatttgtaggtaaaagtcatgtttgaacaattgc 100  Q
    |||||||||||  ||| || ||| ||||| |||||||||| ||| ||||||||| || |||||||||||||    
T  39329118 ctgtcaattatatattatctataggtaaacgtctatttatctgtcggtaaaagttatttttgaacaattgc 39329048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 44725280 - 44725218
Alignment:
Q  71 tgtaggtaaaagtcatgtttgaacaattgcttatatatttaactacaatttaattgtttatca 133  Q
    |||| ||||||||||||||||||||  | || || ||||||||||||| |||||| |||||||    
T  44725280 tgtaagtaaaagtcatgtttgaacatatactcatgtatttaactacaacttaattatttatca 44725218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 17985695 - 17985735
Alignment:
Q  54 gtaaatgtctatttatttgtaggtaaaagtcatgtttgaac 94  Q
    |||||||||||||| ||||||| ||||| ||||||||||||    
T  17985695 gtaaatgtctatttgtttgtagataaaaatcatgtttgaac 17985735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University