View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_11 (Length: 475)
Name: NF6866A_low_11
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_11 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0945 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 15 - 475
Target Start/End: Original strand, 24546007 - 24546466
Alignment:
| Q |
15 |
tataattgaagtgtaaaaccaataagaggctcttcagcctaatcttaaagatgaagtcaatctttgttaatctgagtctactctaaattgaagcaaacac |
114 |
Q |
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| T |
24546007 |
tataattgaagtgtaaaaccaataagaggctcttcagcctaatcttaaagatgaagtcaatctttgttaatttgagtctactctaaattgaagcaaacac |
24546106 |
T |
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| Q |
115 |
tatggaattaccggtccaaataaaagaagcattcatgggtttgtagaaagaacgaaaacagaagcaattatggccatgccatttatatcataatagagag |
214 |
Q |
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| T |
24546107 |
tatggaattaccagtccaaa-aaaagaagcattcatgggtttgtagaaagaacgaaaaaagaagcaatgatggccatgtcatttatatcataatagagag |
24546205 |
T |
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| Q |
215 |
cttaattttgtaatgtaattagtaaaaggggtaaaaggagcaattacatgggtgcagaaagaacattggggagcaccccattaatagaaggtgcatcttg |
314 |
Q |
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| T |
24546206 |
cttaattttgtaatataattagtaaaaggggtaaaaggagcaagtacatgggtgcagaaagaacattggggagcaccccattaatagaaggtgcatcttg |
24546305 |
T |
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| Q |
315 |
tacgttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaacccaatcaaataattggactgagcatggtttccataaatgccatat |
414 |
Q |
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| T |
24546306 |
taggttggtgcaatctgtcgccttgaaagataccagttgcttttccaaatcaaacccaatcaaataatttgactgagcatggtttccataaatgccatat |
24546405 |
T |
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| Q |
415 |
tcgttactaaaagtgctggtgaatgcaaagcagaaaataccatcttgtaccggaatgaaga |
475 |
Q |
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| T |
24546406 |
tcgttactaaaagtgctggtgaatgcaaagcaaaaaataccatcttgtaccggaatgaaga |
24546466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 319 - 416
Target Start/End: Original strand, 24538936 - 24539033
Alignment:
| Q |
319 |
ttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaacccaatcaaataattggactgagcatggtttccataaatgccatattc |
416 |
Q |
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| T |
24538936 |
ttggtgcaatctgttgccttgaaagaaaccacctgcctttccaaatcaaacccaatcaaatagtttgactgggcatagtttccataagtgacatattc |
24539033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0945 (Bit Score: 131; Significance: 9e-68; HSPs: 2)
Name: scaffold0945
Description:
Target: scaffold0945; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 245 - 475
Target Start/End: Complemental strand, 632 - 411
Alignment:
| Q |
245 |
gtaaaaggagcaattacatgggtgcagaaagaacattggggagcaccccattaatagaaggtgcatcttgtacgttggtgcaatctgtcgccttgaaaga |
344 |
Q |
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| T |
632 |
gtaaaaggaacaagtacatgggtgaagaaagaaaattggggagcacccta---------ggtgcatcttgtaagttggtgcaatctgtggccttgaaaga |
542 |
T |
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| Q |
345 |
taccacttgcctttccaaatcaaacccaatcaaataattggactgagcatggtttccataaatgccatattcgttactaaaagtgctggtgaatgcaaag |
444 |
Q |
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| T |
541 |
aaccacttgcttttccaaatcaaacccaatcaaataatttgactgcacatagcttccataagtgccatattcgttactaaaagagctggtgaatgcaaag |
442 |
T |
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| Q |
445 |
cagaaaataccatcttgtaccggaatgaaga |
475 |
Q |
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| T |
441 |
cagaaaataccatattgtaccggaatgaaga |
411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0945; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 855 - 722
Alignment:
| Q |
17 |
taattgaagtgtaaaaccaataagaggctcttcagcctaatcttaaagatgaagtcaatctttgttaatctgagtctactctaaattgaagcaaacacta |
116 |
Q |
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| T |
855 |
taattgaagcataaaacctataagagact-ttaagtccaatcttaaagatgaagtcaatcttact-aatttgagtcta-----aattgaagcaaacactt |
763 |
T |
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| Q |
117 |
tggaattaccg-gtccaaataaaagaagcattcatgggttt |
156 |
Q |
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| T |
762 |
tggaatgaccaagtccaaataaaagaagcattcatgggttt |
722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 383
Target Start/End: Original strand, 1667880 - 1667944
Alignment:
| Q |
319 |
ttggtgcaatctgtcgccttgaaagataccacttgcctttccaaatcaaacccaatcaaataatt |
383 |
Q |
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| T |
1667880 |
ttggtacaatctgttggcttgaaagagaccacttgtctatccaaatcaaatcctattaaataatt |
1667944 |
T |
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