View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6866A_low_132 (Length: 303)
Name: NF6866A_low_132
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_132 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 286
Target Start/End: Complemental strand, 15152823 - 15152543
Alignment:
| Q |
7 |
atataagcatagcatgtaccatgttttatcacgaaaaacttcaatatacgtacgttggaattattcatcatgaattattattgatcttgaactcaaagaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15152823 |
atataagcatagcatgtaccatgttttatcacgaaaaacttcaacatacgtacgttggaattattcatcatgaattattattgatcttgaactcaaagaa |
15152724 |
T |
|
| Q |
107 |
tattgtatattgatgggcctgatgggtttagaacttgatgagtggataatgaatttaatgaag-nnnnnnnnttcaatgagtgctataagcatgaaggag |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
15152723 |
tattgtatattgatgggcctgatgggtttagaacttgatgagtggataatgaatttaatgaagaaaaaaaaaatcaatgagtgctgtaagcatgaaggag |
15152624 |
T |
|
| Q |
206 |
aatattttgtaaaaaatgtgctcccccattgtcatatgttcaaatttttagttacattttggccataccaccatgtgatat |
286 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15152623 |
aatattttgaaaaaaatgtgctcccccattgtcatatgttcaaatttttagttacattttggccataccaccatgtgatat |
15152543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University