View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6866A_low_134 (Length: 301)

Name: NF6866A_low_134
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6866A_low_134
NF6866A_low_134
[»] chr1 (1 HSPs)
chr1 (8-301)||(3428732-3429025)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 3428732 - 3429025
Alignment:
Q  8 ggctggtccttgaaatgagaggaaaactcctaaaattccaatccctatcaccatataaagagaccaaaaagtagtgtaccgaatgatggtagattaaaaa 107  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3428732 ggctggtccttggaatgagaggaaaactcctaaaattccaatccctatcaccatataaagagaccaaaaagtagtgtaccaaatgatggtagattaaaaa 3428831  T
Q  108 taaaaattcttctcataactcatgcacacttaatctctaatttcaattctacgcgactaatagcattgatcgcagatatattagattaattcaacgactg 207  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||    
T  3428832 taaaaattcttctcataactcatccacacttaatctctaatttcaattctacgcgactaataacattgatcgcataaatattagattaattcaacgactg 3428931  T
Q  208 agattttgctaacaacggaaaaggatccaactatctaccacttgacttggattttctacggctgcaacactatactaacacctaccactagtat 301  Q
    |||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||| || ||||||| |||||||||||||||||||||||    
T  3428932 agatttcgctaataacggaaaaggatccaactatctatcacttgacttggattttctacagccgcaacaccatactaacacctaccactagtat 3429025  T

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