View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_136 (Length: 300)
Name: NF6866A_low_136
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_136 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 294
Target Start/End: Complemental strand, 41010960 - 41010675
Alignment:
| Q |
9 |
gagaagaatatgatttcattgcagattctaaactttgcattccatgtaatgaacatcttttccttagtgttcttagttttgctagctccacacataatga |
108 |
Q |
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| T |
41010960 |
gagaagaatatgatttcattgcagattctaaactttgtattccatgtaatgaacatcttttccttagtgttcttagttttgctagctccacacataatga |
41010861 |
T |
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| Q |
109 |
aaaggtgtctgtttgtgtctgacatgaggaatttatcatcctttaattttacttgagacattagttcatatattatactagcttttaagttctaacagct |
208 |
Q |
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| T |
41010860 |
aaaggtgtttgtttgtgtctgacatgagaaatttatcatcctttaattttacttgagacattagttcatatattatactagcttttaagttctaacagct |
41010761 |
T |
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| Q |
209 |
atgctgatatatatagttgattgatgtgttgattaagtgtcatgtatgtagagcgccaatttgaatcaattaattcaggaacatga |
294 |
Q |
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| T |
41010760 |
atgctgatatatatagttgattcatgtgttgattaagtgtcatgtatgtagagtgccaatttgaatcaattaattcaggaacatga |
41010675 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 28118910 - 28118978
Alignment:
| Q |
10 |
agaagaatatgatttcattgcagattctaaactttgcattccatgtaatgaacatcttttccttagtgt |
78 |
Q |
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|||||| ||||||||||| || ||||| ||||| || ||||| ||| |||||||||||||||| ||||| |
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| T |
28118910 |
agaagagtatgatttcatggctgattcaaaactatgtattccttgtcatgaacatcttttcctaagtgt |
28118978 |
T |
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