View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6866A_low_138 (Length: 298)

Name: NF6866A_low_138
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6866A_low_138
NF6866A_low_138
[»] chr2 (9 HSPs)
chr2 (2-233)||(19861717-19861949)
chr2 (2-211)||(19866308-19866518)
chr2 (2-211)||(19871209-19871419)
chr2 (2-211)||(19876110-19876320)
chr2 (23-233)||(36584987-36585198)
chr2 (2-193)||(38177921-38178105)
chr2 (80-112)||(19866257-19866289)
chr2 (80-112)||(19871158-19871190)
chr2 (80-112)||(19876059-19876091)
[»] chr3 (6 HSPs)
chr3 (2-233)||(2064530-2064762)
chr3 (57-233)||(43065207-43065384)
chr3 (235-287)||(32893037-32893089)
chr3 (57-233)||(44496731-44496907)
chr3 (190-235)||(31618105-31618150)
chr3 (192-236)||(2430178-2430222)
[»] chr1 (3 HSPs)
chr1 (3-234)||(48581157-48581381)
chr1 (187-230)||(22902341-22902384)
chr1 (191-233)||(18554007-18554049)
[»] chr8 (2 HSPs)
chr8 (68-235)||(28993389-28993556)
chr8 (191-233)||(16309382-16309424)
[»] chr5 (3 HSPs)
chr5 (187-234)||(39383127-39383174)
chr5 (187-233)||(39290162-39290208)
chr5 (190-233)||(14089002-14089045)
[»] chr7 (1 HSPs)
chr7 (187-233)||(19976321-19976367)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 2 - 233
Target Start/End: Complemental strand, 19861949 - 19861717
Alignment:
Q  2 attactccctaaatgcatttgattatcatcaattcccataaattatttgtattcacgggcgggttcgg-tacccgcggttgaagttcatttacccgcatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||    
T  19861949 attactccctaaatgcatttgattatcatcaattcccataaattatttgtattcgcgggcgggttcgggtacccgcggttgaagttcatctacccgcatc 19861850  T
Q  101 tgcccaattaaacccttaaatacccgtgtttataacccgtagacccgttaacccgctataacccgcacatatcgggttgtttcctccggttttttgcggg 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19861849 tgcccaattaaactcttaaatacccgtgtttataacccgtagacccgttaacccgctataacccgcacatatcgggttgtttcctccggttttttgcggg 19861750  T
Q  201 ttgggtcgggccgcgggtccttgtccagcccta 233  Q
    ||||||||||||||||||||||||||| |||||    
T  19861749 ttgggtcgggccgcgggtccttgtccaacccta 19861717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 19866518 - 19866308
Alignment:
Q  2 attactccctaaatgcatttgattatcatcaattcccataaattatttgtattcacgggcgggttcgg-tacccgcggttgaagttcatttacccgcatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||    
T  19866518 attactccctaaatgcatttgattatcatcaattcccataaattatttgtattcgcgggcgggttcgggtacccgcggttgaagttcatctacccgcatc 19866419  T
Q  101 tgcccaattaaacccttaaatacccgtgtttataacccgtagacccgttaacccgctataacccgcacatatcgggttgtttcctccggttttttgcggg 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19866418 tgcccaattaaactcttaaatacccgtgtttataacccgtagacccgttaacccgctataacccgcacatatcgggttgtttcctccggttttttgcggg 19866319  T
Q  201 ttgggtcgggc 211  Q
    |||||||||||    
T  19866318 ttgggtcgggc 19866308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 19871419 - 19871209
Alignment:
Q  2 attactccctaaatgcatttgattatcatcaattcccataaattatttgtattcacgggcgggttcgg-tacccgcggttgaagttcatttacccgcatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||    
T  19871419 attactccctaaatgcatttgattatcatcaattcccataaattatttgtattcgcgggcgggttcgggtacccgcggttgaagttcatctacccgcatc 19871320  T
Q  101 tgcccaattaaacccttaaatacccgtgtttataacccgtagacccgttaacccgctataacccgcacatatcgggttgtttcctccggttttttgcggg 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19871319 tgcccaattaaactcttaaatacccgtgtttataacccgtagacccgttaacccgctataacccgcacatatcgggttgtttcctccggttttttgcggg 19871220  T
Q  201 ttgggtcgggc 211  Q
    |||||||||||    
T  19871219 ttgggtcgggc 19871209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 19876320 - 19876110
Alignment:
Q  2 attactccctaaatgcatttgattatcatcaattcccataaattatttgtattcacgggcgggttcgg-tacccgcggttgaagttcatttacccgcatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||    
T  19876320 attactccctaaatgcatttgattatcatcaattcccataaattatttgtattcgcgggcgggttcgggtacccgcggttgaagttcatctacccgcatc 19876221  T
Q  101 tgcccaattaaacccttaaatacccgtgtttataacccgtagacccgttaacccgctataacccgcacatatcgggttgtttcctccggttttttgcggg 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19876220 tgcccaattaaactcttaaatacccgtgtttataacccgtagacccgttaacccgctataacccgcacatatcgggttgtttcctccggttttttgcggg 19876121  T
Q  201 ttgggtcgggc 211  Q
    |||||||||||    
T  19876120 ttgggtcgggc 19876110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 36585198 - 36584987
Alignment:
Q  23 attatcatcaattcccataaattatttgtattcacgggcgggttcgg-tacccgcggttgaagttcatttacccgcatctgcccaattaaacccttaaat 121  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  36585198 attatcatcaattcccataagttatttgtattcacgggcgggttcgggtacccgtggttgaagttcatctacccgcatctgcccaattaaacccttaaat 36585099  T
Q  122 acccgtgtttataacccgtagacccgttaacccgctataacccgcacatatcgggttgtttcctccggttttttgcgggttgggtcgggccgcgggtcct 221  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36585098 acccgtatttataacccgtagacccgttaacccgctataacccgcacatatcgggttgtttcctccggttttttgcgggttgggtcggaccgcgggtcct 36584999  T
Q  222 tgtccagcccta 233  Q
    ||||||||||||    
T  36584998 tgtccagcccta 36584987  T

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Target: chr2; HSP #6
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 2 - 193
Target Start/End: Complemental strand, 38178105 - 38177921
Alignment:
Q  2 attactccctaaatgcatttgattatcatcaattcccataaattatttgtattcacgggcgggttc-ggtacccgcggttgaagttcatttacccgcatc 100  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| |||||| |||||||| |    
T  38178105 attactccctaaatgcatttgattatcatcaattctcataagttatttgtattcacgggcgggttcgggtacccgcggttgaggttcatctacccgcacc 38178006  T
Q  101 tgcccaattaaacccttaaatacccgtgtttataacccgtagacccgttaacccgctataacccgcacatatcgggttgtttcctccggtttt 193  Q
     ||||||||||||||||||||||| || ||||||        ||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  38178005 cgcccaattaaacccttaaatacctgtatttata--------acccgttgacccgctataacccgcacatatcgggttgtttcctccagtttt 38177921  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 19866289 - 19866257
Alignment:
Q  80 tgaagttcatttacccgcatctgcccaattaaa 112  Q
    |||||||||| ||||||||||||||||||||||    
T  19866289 tgaagttcatctacccgcatctgcccaattaaa 19866257  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 19871190 - 19871158
Alignment:
Q  80 tgaagttcatttacccgcatctgcccaattaaa 112  Q
    |||||||||| ||||||||||||||||||||||    
T  19871190 tgaagttcatctacccgcatctgcccaattaaa 19871158  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 19876091 - 19876059
Alignment:
Q  80 tgaagttcatttacccgcatctgcccaattaaa 112  Q
    |||||||||| ||||||||||||||||||||||    
T  19876091 tgaagttcatctacccgcatctgcccaattaaa 19876059  T

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Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 2 - 233
Target Start/End: Original strand, 2064530 - 2064762
Alignment:
Q  2 attactccctaaatgcatttgattatcatcaattcccataaattatttgtattcacgggcgggttcgg-tacccgcggttgaagttcatttacccgcatc 100  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||      
T  2064530 attactccttaaatgcatttgattatcatcaattcccataagttatttgtattcacgggcgggtttgggtacccgcgattgaagttcatctacccgcaca 2064629  T
Q  101 tgcccaattaaacccttaaatacccgtgtttataacccgtagacccgttaacccgctataacccgcacatatcgggttgtttcctccggttttttgcggg 200  Q
     ||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2064630 cgcccaatcaaacccttaaatacccgtatttataacccgtagacccattaacccgctataacccgcacatatcgggttgtttcctccgattttttgcggg 2064729  T
Q  201 ttgggtcgggccgcgggtccttgtccagcccta 233  Q
    ||||||||| |||||||||||||||||||||||    
T  2064730 ttgggtcggaccgcgggtccttgtccagcccta 2064762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 233
Target Start/End: Original strand, 43065207 - 43065384
Alignment:
Q  57 cgggcgggttcgg-tacccgcggttgaagttcatttacccgcatctgcccaattaaacccttaaatacccgtgtttataacccgtagacccgttaacccg 155  Q
    ||||||||||||| ||||  ||| |||||||| ||||||||| |||||||| || |||||||| ||||||||  || | |||||| ||||||   |||||    
T  43065207 cgggcgggttcgggtaccttcgggtgaagttcctttacccgcctctgcccatttgaacccttagatacccgtaattgtgacccgttgacccgcggacccg 43065306  T
Q  156 ctataacccgcacatatcgggttgtttcctccggttttttgcgggttgggtcgggccgcgggtccttgtccagcccta 233  Q
    ||  ||||| | || ||||| || |||| | ||||||||| |||||| |  |||||| ||||||||||||||||||||    
T  43065307 cttgaacccactcagatcggtttttttctttcggttttttccgggttagaccgggccacgggtccttgtccagcccta 43065384  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 32893037 - 32893089
Alignment:
Q  235 ttgccggtatatatcttaagttcctccaccatctatacttttgctctcttcat 287  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  32893037 ttgccgatatatatcttaagttcctccaccatttatacttttgctctcttcat 32893089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 233
Target Start/End: Complemental strand, 44496907 - 44496731
Alignment:
Q  57 cgggcgggttcgg-tacccgcggttgaagttcatttacccgcatctgcccaattaaacccttaaatacccgtgtttataacccgtagacccgttaacccg 155  Q
    ||||||||||||| ||||||||||||||| || ||||||||| ||||||||  |||||||||  |||||| | | | |||||||| ||||||   |||||    
T  44496907 cgggcgggttcgggtacccgcggttgaagatcctttacccgcctctgcccatgtaaacccttgtatacccatatctgtaacccgttgacccgaggacccg 44496808  T
Q  156 ctataacccgcaca-tatcgggttgtttcctccggttttttgcgggttgggtcgggccgcgggtccttgtccagcccta 233  Q
     | |||||||| || | ||||||  |||||  | ||||||| ||| ||||| |||||| ||||||||| ||||||||||    
T  44496807 ttttaacccgctcagtttcgggt--tttccctcagtttttttcggtttgggccgggccacgggtccttatccagcccta 44496731  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 31618150 - 31618105
Alignment:
Q  190 ttttttgcgggttgggtcgggccgcgggtccttgtccagccctaat 235  Q
    |||||| || |||||| |||||| ||||||||||||||||||||||    
T  31618150 tttttttcgagttgggccgggccacgggtccttgtccagccctaat 31618105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 2430222 - 2430178
Alignment:
Q  192 ttttgcgggttgggtcgggccgcgggtccttgtccagccctaatt 236  Q
    |||| ||||||||| |||| || ||||||||||||||||||||||    
T  2430222 tttttcgggttgggccgggtcgtgggtccttgtccagccctaatt 2430178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 3 - 234
Target Start/End: Original strand, 48581157 - 48581381
Alignment:
Q  3 ttactccctaaatgcatttgattatcatcaattcccataaattatttgtattcacgggcgggttcg-gtacccgcggttgaagttcatttacccgcatct 101  Q
    |||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||  ||||||||||||||||||||| |||||||| |     
T  48581157 ttactctctaaatgcatttgattatcatcaatttccataagttatttgtattcacggacgggttcatgtacccgcggttgaagttcatctacccgcaccc 48581256  T
Q  102 gcccaattaaacccttaaatacccgtgtttataacccgtagacccgttaacccgctataacccgcacatatcgggttgtttcctccggttttttgcgggt 201  Q
    ||||||||||||||||||||| |||| ||||||||||||||        ||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  48581257 gcccaattaaacccttaaatatccgtatttataacccgtag--------acccgatataacccgcacatatcgggttgtttcctccggttttttgcaggt 48581348  T
Q  202 tgggtcgggccgcgggtccttgtccagccctaa 234  Q
    ||||||||  |||||||||||||||||||||||    
T  48581349 tgggtcggatcgcgggtccttgtccagccctaa 48581381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 22902341 - 22902384
Alignment:
Q  187 cggttttttgcgggttgggtcgggccgcgggtccttgtccagcc 230  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||    
T  22902341 cggttttttccgggttgggccgggtcgcgggtccttgtccagcc 22902384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 233
Target Start/End: Complemental strand, 18554049 - 18554007
Alignment:
Q  191 tttttgcgggttgggtcgggccgcgggtccttgtccagcccta 233  Q
    ||||| ||||||||||||| || ||||||||||||||||||||    
T  18554049 ttttttcgggttgggtcggtccacgggtccttgtccagcccta 18554007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 235
Target Start/End: Complemental strand, 28993556 - 28993389
Alignment:
Q  68 ggtacccgcggttgaagttcatttacccgcatctgcccaattaaacccttaaatacccgtgtttataacccgtagacccgttaacccgctataacccgca 167  Q
    ||||||||||| ||||| || ||||||||| ||||||||  |||||||||  |||||||| | | |||||||  ||||||   ||||| | ||||||||     
T  28993556 ggtacccgcgggtgaagatcctttacccgcctctgcccatgtaaacccttgtatacccgtatctgtaacccgctgacccgaggacccgttttaacccgct 28993457  T
Q  168 ca-tatcgggttgtttcctccggttttttgcgggttgggtcgggccgcgggtccttgtccagccctaat 235  Q
    || | ||||||| || ||  ||||||||| ||| ||||| |||| | ||||||||||||||||||||||    
T  28993456 cagtttcgggtt-ttcccctcggtttttttcggtttgggccgggtcacgggtccttgtccagccctaat 28993389  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 16309382 - 16309424
Alignment:
Q  191 tttttgcgggttgggtcgggccgcgggtccttgtccagcccta 233  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||    
T  16309382 ttttttcgggttgggccgggtcgcgggtccttgtccagcccta 16309424  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 39383174 - 39383127
Alignment:
Q  187 cggttttttgcgggttgggtcgggccgcgggtccttgtccagccctaa 234  Q
    ||||||||| ||||||||| |||||| |||||||||||||||||||||    
T  39383174 cggttttttccgggttgggccgggccacgggtccttgtccagccctaa 39383127  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 39290162 - 39290208
Alignment:
Q  187 cggttttttgcgggttgggtcgggccgcgggtccttgtccagcccta 233  Q
    ||||||||| ||||||||| |||||| ||||||||||||||||||||    
T  39290162 cggttttttccgggttgggccgggccacgggtccttgtccagcccta 39290208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 14089002 - 14089045
Alignment:
Q  190 ttttttgcgggttgggtcgggccgcgggtccttgtccagcccta 233  Q
    |||||| |||||||||| ||||| ||||||||||||||||||||    
T  14089002 ttttttccgggttgggttgggccacgggtccttgtccagcccta 14089045  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 19976321 - 19976367
Alignment:
Q  187 cggttttttgcgggttgggtcgggccgcgggtccttgtccagcccta 233  Q
    ||||||||| ||||||||| |||| ||||||||||||||||||||||    
T  19976321 cggtttttttcgggttgggccgggtcgcgggtccttgtccagcccta 19976367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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