View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_14 (Length: 460)
Name: NF6866A_low_14
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 30 - 454
Target Start/End: Complemental strand, 17117811 - 17117387
Alignment:
| Q |
30 |
aaaaacaaatgaggaaataaaccaaccatttggagcatggaagtcgagtgtaaaaccaaaattaagccaaccatttggagcttggaagtcgagtgaaaaa |
129 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17117811 |
aaaaacaaatgaggaaataagtcaaccatttggagcatggaagtcgagtgtaaaaccaaaattaagccaaccatttggagcttggaagtcgagtgaaaaa |
17117712 |
T |
|
| Q |
130 |
acaagaactcacacgcagggtgaaaaaacaagtgaagaaataagtcaaccttacagagcttccacagagggtgaaacaataagtctaccttttgaaactc |
229 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
17117711 |
acaagaactcgcacgcagggtgaaaaaacaagtgaagaaataagtaaaccttacagagcttccacagagggtgaaaaaataagtctaccatttgaaactc |
17117612 |
T |
|
| Q |
230 |
gcacgtggggtgtaaaagagagaaaaagttatgtcgactattgtggacacccatcagctataggagaagataagtattgtgcactatccctaaaatcaat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17117611 |
gcacgtggggtgtaaaagagagaaaaagttatgtcgactattgtggacacccatcagctataggagaagataagtattgtgcactatccctaaaatcaat |
17117512 |
T |
|
| Q |
330 |
gatgaattttgccatatcaaagcttggaacaaatattaaggtaattacaagctcctttgcccaaaaccaagatcaatatagggtggacgaagtgaagaaa |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17117511 |
gatgaattttgccatatcaaagcttggaacaaatattaaggtaattacaagctcctttgcccaaaaccaagatcaatatagggtggacgaagtgaagaaa |
17117412 |
T |
|
| Q |
430 |
attggagacaacgcggtgttgtgtc |
454 |
Q |
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| T |
17117411 |
attggagacaacgcggtgttgtgtc |
17117387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 216 - 454
Target Start/End: Original strand, 17107205 - 17107443
Alignment:
| Q |
216 |
accttttgaaactcgcacgtggggtgtaaaagagagaaaaagttatgtcgactattgtggacacccatcagctataggagaagataagtattgtgcacta |
315 |
Q |
| |
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|||||||||| ||| ||| ||||||| |||||| ||| |||||| || | |||||||| || ||||| |||||||| ||||| |||||||||||| || |
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| T |
17107205 |
accttttgaagctcacacatggggtggaaaagaaagacaaagttttgacaactattgtatacgtccatctgctataggggaagagaagtattgtgcatta |
17107304 |
T |
|
| Q |
316 |
tccctaaaatcaatgatgaattttgccatatcaaagcttggaacaaatattaaggtaattacaagctcctttgcccaaaaccaagatcaatatagggtgg |
415 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |||||||||||||||||||||||||||| ||||| |
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| T |
17107305 |
tcccttaaatcaatgatgaattttgccatatcaaagcttggaactaatattaaggtgatttcaagttcctttgcccaaaaccaagatcaatataaggtgg |
17107404 |
T |
|
| Q |
416 |
acgaagtgaagaaaattggagacaacgcggtgttgtgtc |
454 |
Q |
| |
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| T |
17107405 |
atgaagtgaagaaaattggagacaaagcagtgatgtgtc |
17107443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 266 - 454
Target Start/End: Original strand, 17004073 - 17004261
Alignment:
| Q |
266 |
actattgtggacacccatcagctataggagaagataagtattgtgcactatccctaaaatcaatgatgaattttgccatatcaaagcttggaacaaatat |
365 |
Q |
| |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| ||||||||||| || || || |
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| T |
17004073 |
actattgtagaagcccatcagctataggagaagataagtattgtgcactatccctagaatcaatggtagattttgccatttcaaagcttgggaccaacat |
17004172 |
T |
|
| Q |
366 |
taaggtaattacaagctcctttgcccaaaaccaagatcaatatagggtggacgaagtgaagaaaattggagacaacgcggtgttgtgtc |
454 |
Q |
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|||||| ||| |||| ||||||||| |||| | || |||||| |||||| |||||||| |||||||||||||| | |||| |||||| |
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| T |
17004173 |
taaggtgatttcaagttcctttgccaaaaataaggaccaatatgtggtggatgaagtgaaaaaaattggagacaaagtggtgatgtgtc |
17004261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 278 - 454
Target Start/End: Complemental strand, 17986811 - 17986635
Alignment:
| Q |
278 |
acccatcagctataggagaagataagtattgtgcactatccctaaaatcaatgatgaattttgccatatcaaagcttggaacaaatattaaggtaattac |
377 |
Q |
| |
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||||| |||||||||||||| | |||||||| ||| | ||||| |||||||||| |||| ||||| ||||||||||||| |||||||||| | ||| | |
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| T |
17986811 |
acccagcagctataggagaacacaagtattgcgcatcaaccctagaatcaatgatagatttcgccatttcaaagcttggaaaaaatattaagttgatttc |
17986712 |
T |
|
| Q |
378 |
aagctcctttgcccaaaaccaagatcaatatagggtggacgaagtgaagaaaattggagacaacgcggtgttgtgtc |
454 |
Q |
| |
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||| |||||||| ||||||||||| ||||||| || | ||||||||||||||||||||||| || ||| |||||| |
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| T |
17986711 |
aagttcctttgcacaaaaccaagaccaatatatagtacaggaagtgaagaaaattggagacaaagccgtgatgtgtc |
17986635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 17117913 - 17117804
Alignment:
| Q |
30 |
aaaaacaaatgaggaaataaaccaaccatttggagcatggaagtcgagtgtaaaaccaa------aattaagccaaccatttggagcttggaagtcgagt |
123 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||| |||| ||| || ||||||||||||||||||| |||||||||||| |
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| T |
17117913 |
aaaaacaaatgaggaaataagccaaccatttggagcttggaagtcgagtgaaaaaacaaatgaggaaataagccaaccatttggagcatggaagtcgagt |
17117814 |
T |
|
| Q |
124 |
gaaaaaacaa |
133 |
Q |
| |
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|||||||||| |
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| T |
17117813 |
gaaaaaacaa |
17117804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 17117862 - 17117757
Alignment:
| Q |
30 |
aaaaacaaatgaggaaataaaccaaccatttggagcatggaagtcgagtgtaaaaccaa------aattaagccaaccatttggagcttggaagtcgagt |
123 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||| || |||| |||||||||||||| |||||||||||| |
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| T |
17117862 |
aaaaacaaatgaggaaataagccaaccatttggagcatggaagtcgagtgaaaaaacaaatgaggaaataagtcaaccatttggagcatggaagtcgagt |
17117763 |
T |
|
| Q |
124 |
gaaaaa |
129 |
Q |
| |
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| |||| |
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| T |
17117762 |
gtaaaa |
17117757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 271 - 454
Target Start/End: Complemental strand, 17945658 - 17945475
Alignment:
| Q |
271 |
tgtggacacccatcagctataggagaagataagtattgtgcactatccctaaaatcaatgatgaattttgccatatcaaagcttggaacaaatattaagg |
370 |
Q |
| |
|
|||||| ||||||| |||||||||||||| || | |||||| || ||| ||||||||||| |||| ||||| ||||||||||||| |||||||| | |
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|
| T |
17945658 |
tgtggaaacccatcggctataggagaagagaaacactgtgcatattcactagaatcaatgatggatttcgccatttcaaagcttggaaagaatattaaag |
17945559 |
T |
|
| Q |
371 |
taattacaagctcctttgcccaaaaccaagatcaatatagggtggacgaagtgaagaaaattggagacaacgcggtgttgtgtc |
454 |
Q |
| |
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| || |||| || ||| | |||| |||||| ||||||| |||||| ||||||| ||||| ||||||||||| ||| |||||| |
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|
| T |
17945558 |
tgatgtcaagttcattttctcaaagccaagaccaatatatggtggaggaagtgagaaaaataggagacaacgcagtgatgtgtc |
17945475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 452
Target Start/End: Complemental strand, 17956647 - 17956475
Alignment:
| Q |
280 |
ccatcagctataggagaagataagtattgtgcactatccctaaaatcaatgatgaattttgccatatcaaagcttggaacaaatattaaggtaattacaa |
379 |
Q |
| |
|
|||||||| ||||| ||||| || ||||||||| ||| ||| ||||||||||| ||||||| || ||||||||||||| ||||| || || || ||| |
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|
| T |
17956647 |
ccatcagcaataggggaagacaaacattgtgcaccatcactagaatcaatgatggattttgcaatttcaaagcttggaaagaatatcaaagtgatgtcaa |
17956548 |
T |
|
| Q |
380 |
gctcctttgcccaaaaccaagatcaatatagggtggacgaagtgaagaaaattggagacaacgcggtgttgtg |
452 |
Q |
| |
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| |||||| | |||| || || |||||| |||||| |||||||| ||||| ||||||||||| ||| |||| |
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|
| T |
17956547 |
gttccttttctaaaaatcatgaccaatatgtggtggaagaagtgaataaaataggagacaacgcagtgatgtg |
17956475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 17117947 - 17117906
Alignment:
| Q |
92 |
taagccaaccatttggagcttggaagtcgagtgaaaaaacaa |
133 |
Q |
| |
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|||||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
17117947 |
taagccaaccttttggagcatggaagtcgagtgaaaaaacaa |
17117906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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