View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_141 (Length: 297)
Name: NF6866A_low_141
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_141 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 139 - 297
Target Start/End: Original strand, 10274514 - 10274672
Alignment:
| Q |
139 |
gaaggacatacacatatgatactgatacatcaacacatgtaatcatatatgttagtattggcatgagacatatatcagataccgaacacaccttcggtaa |
238 |
Q |
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| T |
10274514 |
gaaggacatacacatatgatactgatagatcaacacatgtaatcatatatgttagtattggcatgagacatatatcagataccgaacacaccttcggtaa |
10274613 |
T |
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| Q |
239 |
cgaaggtcgttgttaccgagcttttgtgccaccacaaatgaaatagggtaatgataaaa |
297 |
Q |
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| T |
10274614 |
cgaaggtcgttgttaccgagcttttgtgccaccacaaatgaaatagggtaatgataaaa |
10274672 |
T |
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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 10274384 - 10274450
Alignment:
| Q |
12 |
atgaacgaaaatgatattaaaccctaaaaaataaacact--tattatcaagtgaatcaatgagtgag |
76 |
Q |
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| T |
10274384 |
atgaacgaaaatgatattaaaaaataaaaaataaacactcttattatcaagtgaatcaatgagtgag |
10274450 |
T |
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