View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6866A_low_147 (Length: 294)
Name: NF6866A_low_147
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_147 |
 | |
|
| [»] scaffold0491 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 42 - 282
Target Start/End: Complemental strand, 2338619 - 2338379
Alignment:
| Q |
42 |
tggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgc |
141 |
Q |
| |
|
|||||||| || ||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2338619 |
tggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgc |
2338520 |
T |
|
| Q |
142 |
tggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgccg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2338519 |
tggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagctatgatagtatatcaccagggtgtcttcccattaaagtttcaagtgcca |
2338420 |
T |
|
| Q |
242 |
ctactccaaagctatatacatcacacttttcactcacaacc |
282 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
2338419 |
ctactccaaaactatatacatcgcacttttcactcacaacc |
2338379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 282
Target Start/End: Complemental strand, 2330802 - 2330523
Alignment:
| Q |
3 |
aagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatg |
102 |
Q |
| |
|
||||||| |||| ||||||| |||||| |||||| |||||||| || ||||||||||||||||||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
2330802 |
aagctctatgacaaaactctgtgacacacttttcattgatggtcgagcgcaagggttgagatttaagcatccaaatgctactacggcaacacgaattatg |
2330703 |
T |
|
| Q |
103 |
tcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagta |
202 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
2330702 |
tccagtaaaacctttacattatttggaagtgggagacgttggtctaatacttcacataatttcatcccttgagtcgatgctaactgaagtgatgacagta |
2330603 |
T |
|
| Q |
203 |
tatcaccagggtgtcttcctattaaagtttcaagtgccgctactccaaagctatatacatcacacttttcactcacaacc |
282 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| | |||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
2330602 |
tatcaccagggtgtcttcccattaaagtttcaagtgccacaactccaaaactatatacatcgcacttttcactcacaacc |
2330523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 29 - 289
Target Start/End: Complemental strand, 2322162 - 2321902
Alignment:
| Q |
29 |
cacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttgg |
128 |
Q |
| |
|
|||| |||||| |||||||||| ||| |||||||||||||| |||||||| | | ||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
2322162 |
cacatttcattgttggtcgagagaaaggattgagatttaagcaagcaaatgctattgtggcaacacgaattatgtcaagtaaaaccatcacattattcgg |
2322063 |
T |
|
| Q |
129 |
aagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaaa |
228 |
Q |
| |
|
|||| | ||||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
2322062 |
aagtagaagacgttggtctaatacttcacataacttaatgccttgagttgatgctaactgaagtgatgacagtatatcaccagggtgtcttcccattaaa |
2321963 |
T |
|
| Q |
229 |
gtttcaagtgccgctactccaaagctatatacatcacacttttcactcacaaccgtagtat |
289 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
2321962 |
gtttcaagtgccacaactccaaagctatatacatcgcacttttcactcacaaccatagtat |
2321902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 62 - 289
Target Start/End: Original strand, 3954500 - 3954727
Alignment:
| Q |
62 |
gatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataa |
161 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||| ||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3954500 |
gatttaagcatgcagatgctactacaacaacatgaattatgtcaagtaaaactttcacatcatttggaagtgggagacgttggtctaatacttcacataa |
3954599 |
T |
|
| Q |
162 |
tttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgccgctactccaaagctatataca |
261 |
Q |
| |
|
||| ||| ||||||| |||| ||| ||||||||||||| ||| || | || | |||||| | |||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
3954600 |
tttgatgtcttgagttgatgttaattgaagtgatgacaatatttcctcgggatatcttcccactaaaatttcaagtgccactactccaaaactatataca |
3954699 |
T |
|
| Q |
262 |
tcacacttttcactcacaaccgtagtat |
289 |
Q |
| |
|
||||| |||||||| |||||| |||||| |
|
|
| T |
3954700 |
tcacatttttcacttacaaccatagtat |
3954727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 42 - 289
Target Start/End: Complemental strand, 1089490 - 1089243
Alignment:
| Q |
42 |
tggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgc |
141 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||| || || |||||| ||||||||||| | | | | | | ||| |||||||||| ||||| |
|
|
| T |
1089490 |
tggtcgagaacgaggattgagatttaagcatgcaaatgctaccacggcaacatgaattatgtcatggatagctatttctttacttggaagtggaagacgt |
1089391 |
T |
|
| Q |
142 |
tggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgccg |
241 |
Q |
| |
|
||||||||||||| ||||||||| || | ||| ||||||| | | ||||| ||||||| |||||| ||||||| ||||| | |||||||||||||||| |
|
|
| T |
1089390 |
tggtctaatacttgacataatttgatactttgtgtcgatgttgattgaagggatgacaatatatcttcagggtgccttccaactaaagtttcaagtgcca |
1089291 |
T |
|
| Q |
242 |
ctactccaaagctatatacatcacacttttcactcacaaccgtagtat |
289 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||| || |||||| |
|
|
| T |
1089290 |
ctacaccaaaactatatacatcacacttttcactcacagccatagtat |
1089243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 289
Target Start/End: Original strand, 1549892 - 1550155
Alignment:
| Q |
26 |
acacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatt |
125 |
Q |
| |
|
||||||| |||||| ||||||||||||||| ||||||||||| ||||||||||| || || ||||| ||||||||||| ||| ||| | ||||||| |
|
|
| T |
1549892 |
acacacatttcattgttggtcgagagcgaggattgagatttaaacatgcaaatgctaccacggcaacttgaattatgtcacgtataactatttcattatt |
1549991 |
T |
|
| Q |
126 |
tggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctatt |
225 |
Q |
| |
|
||||||||| | ||| ||||||||||||| ||||||||| || | ||| ||||||| | |||||||||| || |||||| ||||||| |||| | | |
|
|
| T |
1549992 |
tggaagtggaatacgttggtctaatacttgacataatttgatactttgtgtcgatggagattgaagtgatgccaatatatcctcagggtgctttccaact |
1550091 |
T |
|
| Q |
226 |
aaagtttcaagtgccgctactccaaagctatatacatcacacttttcactcacaaccgtagtat |
289 |
Q |
| |
|
|| |||||||||||| |||| ||||| ||||||||||||||||| ||| ||||| || |||||| |
|
|
| T |
1550092 |
aatgtttcaagtgccactacaccaaaactatatacatcacacttctcattcacagccatagtat |
1550155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 42 - 289
Target Start/End: Original strand, 1556728 - 1556975
Alignment:
| Q |
42 |
tggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgc |
141 |
Q |
| |
|
||||||||| |||| |||| |||||||||||||||||| || || ||||| ||||||||||| ||| ||| | |||||||||||||||| |||||| |
|
|
| T |
1556728 |
tggtcgagaatgaggattgatatttaagcatgcaaatgcaaccacgacaacatgaattatgtcacgtataactatgtcattatttggaagtggaagacgc |
1556827 |
T |
|
| Q |
142 |
tggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgccg |
241 |
Q |
| |
|
||||||||||||| ||||| ||| | | | | ||||||| | |||||||||||||||||| ||| ||||| || ||||| | ||||||||||||||| |
|
|
| T |
1556828 |
tggtctaatacttgacatagtttgacacttcgtgtcgatgttgactgaagtgatgacagtaaatctccaggatgccttccaactaaagtttcaagtgcta |
1556927 |
T |
|
| Q |
242 |
ctactccaaagctatatacatcacacttttcactcacaaccgtagtat |
289 |
Q |
| |
|
| || ||||| |||||| |||||||||||||| |||||||| |||||| |
|
|
| T |
1556928 |
caacaccaaaactatatgcatcacacttttcattcacaaccatagtat |
1556975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 65 - 278
Target Start/End: Complemental strand, 1597220 - 1597007
Alignment:
| Q |
65 |
ttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataattt |
164 |
Q |
| |
|
|||||||||||||||| |||| |||||| ||||||||| | ||| ||| || |||||||||||||||| ||||| ||||||||||||| ||||| ||| |
|
|
| T |
1597220 |
ttaagcatgcaaatgcaactatggcaacatgaattatgtgacgtataactatctcattatttggaagtggaagacgttggtctaatacttgacatagttt |
1597121 |
T |
|
| Q |
165 |
catgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgccgctactccaaagctatatacatca |
264 |
Q |
| |
|
| | ||| ||||||| | | ||||||||||||| || ||| |||||||| ||||| | |||||||||||||||| | || |||||||||||||||||| |
|
|
| T |
1597120 |
gagactttgtgtcgatgatgattgaagtgatgacaataaatccccagggtgccttccaactaaagtttcaagtgccaccacgccaaagctatatacatca |
1597021 |
T |
|
| Q |
265 |
cacttttcactcac |
278 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
1597020 |
cacttttcattcac |
1597007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 279
Target Start/End: Complemental strand, 1605217 - 1604980
Alignment:
| Q |
42 |
tggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttca-cattatttggaagtgggagacg |
140 |
Q |
| |
|
||||||||| ||||| |||| |||||||||||||||||| || || |||||| ||||||||||| ||| ||| | || | |||||||||||||| ||||| |
|
|
| T |
1605217 |
tggtcgagaacgaggattgatatttaagcatgcaaatgcaaccacggcaacatgaattatgtcacgtataac-tacatcgttatttggaagtggaagacg |
1605119 |
T |
|
| Q |
141 |
ctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgcc |
240 |
Q |
| |
|
|||||||||||||| ||||| ||| | | ||| ||||| | | ||||||||||||| |||||| ||||||| ||||| | ||||| |||||||||| |
|
|
| T |
1605118 |
ctggtctaatacttgacatagtttgacactttgtgtcgaatttgattgaagtgatgacaatatatcctcagggtgccttccaactaaagcttcaagtgcc |
1605019 |
T |
|
| Q |
241 |
gctactccaaagctatatacatcacacttttcactcaca |
279 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||| ||||| |
|
|
| T |
1605018 |
actacaccaaaactatatacatcacacttttcattcaca |
1604980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 64 - 289
Target Start/End: Complemental strand, 3853449 - 3853224
Alignment:
| Q |
64 |
tttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatt |
163 |
Q |
| |
|
||||| ||||||||||| || |||||||| |||| |||| |||| ||||| || ||||||||||| || ||||||| | ||||| |||||||| || || |
|
|
| T |
3853449 |
tttaaacatgcaaatgctacgacagcaacctgaataatgtgaagtgaaaccatctcattatttggacgttggagacgtttgtctagtacttcacgtagtt |
3853350 |
T |
|
| Q |
164 |
tcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgccgctactccaaagctatatacatc |
263 |
Q |
| |
|
| ||| ||||||| |||| ||| ||||||||||||| ||| || |||| |||||||| | |||| ||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
3853349 |
tgatgtcttgagttgatgttaattgaagtgatgacaatatttcctcaggatgtcttcccaataaaatttcaagtgccattaccccaaaactatatacatc |
3853250 |
T |
|
| Q |
264 |
acacttttcactcacaaccgtagtat |
289 |
Q |
| |
|
|||||||||||| |||||| |||||| |
|
|
| T |
3853249 |
acacttttcacttacaaccatagtat |
3853224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 42 - 279
Target Start/End: Complemental strand, 1106830 - 1106593
Alignment:
| Q |
42 |
tggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgc |
141 |
Q |
| |
|
||||||||| ||||| |||| |||||||||||||||||| || || |||||| ||||||||||| ||| ||| | |||||||||||||| |||||| |
|
|
| T |
1106830 |
tggtcgagaacgaggattgatatttaagcatgcaaatgcaaccacggcaacatgaattatgtcacgtataactacgtcgttatttggaagtggaagacgc |
1106731 |
T |
|
| Q |
142 |
tggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaaagtttcaagtgccg |
241 |
Q |
| |
|
||||||||||||| ||||| ||| | | ||| | ||| | | ||||||||||||| |||||| ||||||| ||||| | ||||| |||||||||| |
|
|
| T |
1106730 |
tggtctaatacttgacatagtttgacactttgtggcgaatttgattgaagtgatgacaatatatcctcagggtgccttccaactaaagcttcaagtgcca |
1106631 |
T |
|
| Q |
242 |
ctactccaaagctatatacatcacacttttcactcaca |
279 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||| ||||| |
|
|
| T |
1106630 |
ctacaccaaaactatatacatcacacttttcattcaca |
1106593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 1540642 - 1540930
Alignment:
| Q |
1 |
gtaagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaatta |
100 |
Q |
| |
|
|||||||| ||||| ||||| | |||||| |||||| ||||||||| ||||| ||| |||||||||||||||||| || | | |||| |||||| |
|
|
| T |
1540642 |
gtaagctcggtgacaaaactttgtgacacacgtttcattgttggtcgagaacgaggattgccatttaagcatgcaaatgctaccagggaaacatgaatta |
1540741 |
T |
|
| Q |
101 |
tgtcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacag |
200 |
Q |
| |
|
||||| ||| ||| | |||||||||||||||| ||||| ||||||||||||| || || ||| | | | ||||||| | | ||||||||||||| |
|
|
| T |
1540742 |
tgtcacgtataactatgtcattatttggaagtggaagacgttggtctaatacttgacgtagtttgacacttcttgtcgatgttgattgaagtgatgacaa |
1540841 |
T |
|
| Q |
201 |
tatatcaccagggtgtcttcctattaaagtttcaagtgccgctactccaaagctatatacatcacacttttcactcacaaccgtagtat |
289 |
Q |
| |
|
|| ||| |||||||| ||||| | |||||||||||||| | |||| ||||| ||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
1540842 |
taaatccccagggtgccttccaactaaagtttcaagtgtcactacaccaaaactatatacatcacacttttcattcacagccatagtat |
1540930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 28 - 258
Target Start/End: Original strand, 1563970 - 1564200
Alignment:
| Q |
28 |
acacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttg |
127 |
Q |
| |
|
||||| |||||| ||||||||| ||||| ||||||||||| | ||||||||| || || |||||| ||||||||||| ||| ||| | | ||||||| |
|
|
| T |
1563970 |
acacatttcattgttggtcgagaacgaggattgagatttaaacttgcaaatgctaccacggcaacatgaattatgtcacgtataactatttcgttatttg |
1564069 |
T |
|
| Q |
128 |
gaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctattaa |
227 |
Q |
| |
|
||||| | ||||| ||||||||||||| ||||||||| || | ||| ||||||| | | ||||||||||||| |||||| ||||| | ||||| | ||| |
|
|
| T |
1564070 |
gaagtcgaagacgttggtctaatacttgacataatttgatactttgtgtcgatgttgattgaagtgatgacaatatatctccaggtttccttccaactaa |
1564169 |
T |
|
| Q |
228 |
agtttcaagtgccgctactccaaagctatat |
258 |
Q |
| |
|
||||||||||| | |||| ||||| |||||| |
|
|
| T |
1564170 |
agtttcaagtgtcactacaccaaaactatat |
1564200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 206
Target Start/End: Complemental strand, 2335308 - 2335141
Alignment:
| Q |
42 |
tggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatttggaagtgggagacgc |
141 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||||||||||| || | |||||||||||||||||||||||||| ||||||||||||||| | || || | |
|
|
| T |
2335308 |
tggtcaagagcaaggattgagatttaagcatgcaaatgctacaatgacaacacgaattatgtcaagtaaaaccatcacattatttggaaataggggatgt |
2335209 |
T |
|
| Q |
142 |
tggtctaatacttcaca---taatttcatgccttgagtcgatgctaactgaagtgatgacagtatatc |
206 |
Q |
| |
|
|| |||||||||||||| |||||||||||| |||| ||||| || ||||||||||||| |||||| |
|
|
| T |
2335208 |
tgttctaatacttcacataataatttcatgccgagagttgatgcaaattgaagtgatgacaatatatc |
2335141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 166
Target Start/End: Complemental strand, 2326455 - 2326313
Alignment:
| Q |
26 |
acacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattat--gtcaagtaaaaccttcacatta |
123 |
Q |
| |
|
||||||| |||||| |||||||||| ||| |||||||||||| |||||||||| |||| |||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
2326455 |
acacacatttcattgttggtcgagagaaaggattgagatttaagtatgcaaatgctactaaggcaacacgaattatatgtcaagtaaaaccatcatatta |
2326356 |
T |
|
| Q |
124 |
tttggaagtgggagacgctggtctaatacttcacataatttca |
166 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
2326355 |
ttcagaagtgggagacgttggtctaatacttcacataacttca |
2326313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 3 - 289
Target Start/End: Original strand, 5296 - 5582
Alignment:
| Q |
3 |
aagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatg |
102 |
Q |
| |
|
|||||| ||||| ||||| | | ||||||| |||||| ||||||||| ||||| |||| ||||||||||||||| || || || |||| | |||||||| |
|
|
| T |
5296 |
aagctcggtgacaaaactttgcgacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaaggcaacaacggcaaaatgaattatg |
5395 |
T |
|
| Q |
103 |
tcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagta |
202 |
Q |
| |
|
| | ||| |||| | |||||||||||||||| ||||||||||||||||||| ||||| ||| | | ||| ||||||| | | ||||||||||||| || |
|
|
| T |
5396 |
ttacgtataaccatttcattatttggaagtggaagacgctggtctaatacttgacatagtttgacactttgtgtcgatgttgattgaagtgatgacaata |
5495 |
T |
|
| Q |
203 |
tatcaccagggtgtcttcctattaaagtttcaagtgccgctactccaaagctatatacatcacacttttcactcacaaccgtagtat |
289 |
Q |
| |
|
||| |||||||| ||||| |||||||||||||||| |||| ||||| ||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
5496 |
aatccccagggtgccttccagctaaagtttcaagtgccactacaccaaaactatatacatcacacttttcattcacagccatagtat |
5582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 3 - 273
Target Start/End: Original strand, 18738524 - 18738794
Alignment:
| Q |
3 |
aagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatg |
102 |
Q |
| |
|
|||||| ||||| ||||| | | ||||||| |||||| ||||||||| ||||| |||| |||||||||||||||||| || || ||| || |||||||| |
|
|
| T |
18738524 |
aagctcggtgacaaaactttgcgacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaatgctaccacggcagcatgaattatg |
18738623 |
T |
|
| Q |
103 |
tcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagta |
202 |
Q |
| |
|
||| ||| ||| | |||||||||||||||| ||||| ||||||||||||| ||||| ||| | | ||| ||||||| | | ||||||||||||| || |
|
|
| T |
18738624 |
tcacgtataactatgtcattatttggaagtggaagacggtggtctaatacttgacatagtttgagactttgtgtcgatgttgattgaagtgatgacaata |
18738723 |
T |
|
| Q |
203 |
tatcaccagggtgtcttcctattaaagtttcaagtgccgctactccaaagctatatacatcacacttttca |
273 |
Q |
| |
|
||| |||||||| ||||| | |||||||||||||||| |||| ||||| ||||||||||||||||||||| |
|
|
| T |
18738724 |
aatccccagggtgccttccaactaaagtttcaagtgccactacaccaaaactatatacatcacacttttca |
18738794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 3 - 273
Target Start/End: Original strand, 18743488 - 18743758
Alignment:
| Q |
3 |
aagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatg |
102 |
Q |
| |
|
|||||| ||||| ||||| | | ||||||| |||||| ||||||||| ||||| |||| |||||||||||||||||| || || ||| || |||||||| |
|
|
| T |
18743488 |
aagctcggtgacaaaactttgcgacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaatgctaccacggcagcatgaattatg |
18743587 |
T |
|
| Q |
103 |
tcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagta |
202 |
Q |
| |
|
||| ||| ||| | |||||||||||||||| ||||| ||||||||||||| ||||| ||| | | ||| ||||||| | | ||||||||||||| || |
|
|
| T |
18743588 |
tcacgtataactatgtcattatttggaagtggaagacggtggtctaatacttgacatagtttgagactttgtgtcgatgttgattgaagtgatgacaata |
18743687 |
T |
|
| Q |
203 |
tatcaccagggtgtcttcctattaaagtttcaagtgccgctactccaaagctatatacatcacacttttca |
273 |
Q |
| |
|
||| |||||||| ||||| | |||||||||||||||| |||| ||||| ||||||||||||||||||||| |
|
|
| T |
18743688 |
aatccccagggtgccttccaactaaagtttcaagtgccactacaccaaaactatatacatcacacttttca |
18743758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 3 - 289
Target Start/End: Original strand, 18748455 - 18748741
Alignment:
| Q |
3 |
aagctctgtgacgaaactcttcaacacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatg |
102 |
Q |
| |
|
|||||| ||||| ||||| | | ||||||| |||||| ||||||||| ||||| |||| ||||||||||||||| || || || |||| | |||||||| |
|
|
| T |
18748455 |
aagctcggtgacaaaactttgcgacacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaaggcaacaacggcaaaatgaattatg |
18748554 |
T |
|
| Q |
103 |
tcaagtaaaaccttcacattatttggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagta |
202 |
Q |
| |
|
| | ||| |||| | |||||||||||||||| ||||||||||||||||||| ||||| ||| | | ||| ||||||| | | ||||||||||||| || |
|
|
| T |
18748555 |
ttacgtataaccatttcattatttggaagtggaagacgctggtctaatacttgacatagtttgacactttgtgtcgatgttgattgaagtgatgacaata |
18748654 |
T |
|
| Q |
203 |
tatcaccagggtgtcttcctattaaagtttcaagtgccgctactccaaagctatatacatcacacttttcactcacaaccgtagtat |
289 |
Q |
| |
|
||| |||||||| ||||| |||||||||||||||| |||| ||||| ||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
18748655 |
aatccccagggtgccttccagctaaagtttcaagtgccactacaccaaaactatatacatcacacttttcattcacagccatagtat |
18748741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 289
Target Start/End: Original strand, 18722826 - 18723089
Alignment:
| Q |
26 |
acacacacttcatttctggtcgagagcgagggttgagatttaagcatgcaaatgcgactacagcaacacgaattatgtcaagtaaaaccttcacattatt |
125 |
Q |
| |
|
||||||| |||||| ||||||||| ||||| |||| ||||||||||||||| || || || |||| | ||||||||| | ||| |||| | ||||||| |
|
|
| T |
18722826 |
acacacatttcattgttggtcgagaacgaggattgacatttaagcatgcaaaggcaacaacggcaaaatgaattatgttacgtataaccatttcattatt |
18722925 |
T |
|
| Q |
126 |
tggaagtgggagacgctggtctaatacttcacataatttcatgccttgagtcgatgctaactgaagtgatgacagtatatcaccagggtgtcttcctatt |
225 |
Q |
| |
|
||||||||| ||||||||||||||||||| | ||| ||| | | ||| || |||| | | ||||||||||||| || ||| |||||||| ||||| | |
|
|
| T |
18722926 |
tggaagtggaagacgctggtctaatacttgatatagtttgacactttgtgttgatgttgattgaagtgatgacaataaatccccagggtgccttccagct |
18723025 |
T |
|
| Q |
226 |
aaagtttcaagtgccgctactccaaagctatatacatcacacttttcactcacaaccgtagtat |
289 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
18723026 |
aaagtttcaagtgccactacaccaaaactatatacatcacacttttcattcacagccatagtat |
18723089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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