View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_154 (Length: 290)
Name: NF6866A_low_154
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_154 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 22659720 - 22660005
Alignment:
| Q |
1 |
tggtgttcttccttgattttttcaagtaaatttgattccatcttttctgcatttagcttgtaccaaaaaagcatttaaattagaaaagttaattttgata |
100 |
Q |
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| T |
22659720 |
tggtgttcttcctcgattttttcaagtaaatttgattccatcttttctgcatttagcttgtaccaaaaaagcatttaaattagaaaagttaattttgata |
22659819 |
T |
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| Q |
101 |
tt-aaatgcaaaattcaactcaaaattgtctctaattttatagtgtcg------nnnnnnnnntagagaatattttgtttgttatttgtcggtcaaaggg |
193 |
Q |
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| T |
22659820 |
ttaaaatgcgaaattcaactcaaaattgtctctaattttatagtgtcgaaaagaaaaaaaaagtagaggatattttttttgttatttgtcggtcaaaggg |
22659919 |
T |
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| Q |
194 |
taaaggctactaaagccctcacattaggcctacaaacnnnnnnnnnnnngtatttttcattaaattttatgagaaaaatggtattctatg |
283 |
Q |
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| T |
22659920 |
t-aaggctattaaagccgtcacattaggcctacaaac---aaaaaaaaagtatttttcattaaattttatgagaaaaatggtattttatg |
22660005 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 28967870 - 28967923
Alignment:
| Q |
1 |
tggtgttcttccttgattttttcaagtaaatttgattccatcttttctgcattt |
54 |
Q |
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| T |
28967870 |
tggtgttcttcctatatttcttcaagtaaacttgatttcattttttctgcattt |
28967923 |
T |
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