View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_155 (Length: 289)
Name: NF6866A_low_155
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_155 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 56045570 - 56045301
Alignment:
| Q |
8 |
ctttgtcgtgtcatacttgtgtccacttgacgtgaacaactgattagagaatataggaaacttcctagcatcaaaagtgttaaacctccagtaacatacg |
107 |
Q |
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| T |
56045570 |
ctttgtcgtgtcatacttgtgtccacttgacgtgaacaactgattagagaatataggaaacttcctagcatcaaaagtgttaaacctccagtaacatacg |
56045471 |
T |
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| Q |
108 |
ggtagaattatatagatgaacatgataaatccaaccccaacattaacaatggaagtccacggtgcaacaagtgggcttccatgataagctgaaattccag |
207 |
Q |
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| T |
56045470 |
ggtagaattatatagatgaacatgataaatccaaccccaacattaacaatggaagtccacggtgcaacaagtgggcttccatgataagctgaaattccag |
56045371 |
T |
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| Q |
208 |
cccaatcaagtgtgaatgcaccaattccaagtccatggtaacctgatccaatttgttgtgctgtgatatt |
277 |
Q |
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| T |
56045370 |
cccaatcaagtgtgaatgcaccaattccaagtccatggtaacctgatccaatttgttgtgctgtgatatt |
56045301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 27 - 223
Target Start/End: Complemental strand, 55707012 - 55706814
Alignment:
| Q |
27 |
tgtccacttgacgtgaacaactgattagagaatataggaaacttcctagcatcaaaag-tgttaaacctccagtaacat-acgggtagaattatatagat |
124 |
Q |
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|||||||| || ||||||||||||||||| | |||||||||||||||||||||||||| |||||||| |||| |||||| | | ||||||||||||||| |
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| T |
55707012 |
tgtccactggatgtgaacaactgattagaaagtataggaaacttcctagcatcaaaaggtgttaaacttccactaacattatagatagaattatatagat |
55706913 |
T |
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| Q |
125 |
gaacatgataaatccaaccccaacattaacaatggaagtccacggtgcaacaagtgggcttccatgataagctgaaattccagcccaatcaagtgtgaa |
223 |
Q |
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| T |
55706912 |
gaacaagataaatccaacccaaacattaacagtggaagaccacggtgtaacaagagggcttccatgataagctgaaatccaagcgcagtcaagtgtgaa |
55706814 |
T |
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