View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6866A_low_159 (Length: 288)
Name: NF6866A_low_159
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_159 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 37707542 - 37707274
Alignment:
| Q |
19 |
tttgggttgtgcttctctgtactgtctttagtagaatgttcttacttttggtaggaaaccagtgttgtaaaatagtagctatagtgtacgccatactgga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
37707542 |
tttgggttgtgcttctctgtactgtctttagtagaatgtttttacttttggtaggaaaccagtgttgtaaaatagcggctctagtgtacgccatactgga |
37707443 |
T |
|
| Q |
119 |
atttgaataaatcgttattgttttgcgatacgttatttgatatagttttgttaaatagtggctctagtgccattatagcattgtagcttagcagaatttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37707442 |
atttgaataaatcgttattgttttgcgatacgttatttgatatagttttgttaaatagtggctctagtgccattatagcattgtagcttagcagaatttg |
37707343 |
T |
|
| Q |
219 |
aacaaagtgttattttccatgatctgcgattctggtgaaaaccaacaagatatttcacagtataatcta |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
37707342 |
aacaaagtgttattttccatgatctgcgattctggtgaaaacccacaagatatttcacggtataatcta |
37707274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 37443322 - 37443068
Alignment:
| Q |
19 |
tttgggttgtgcttctctgtactgtctttagtagaatgttcttacttttggtaggaaaccagtgttgtaaaatagtagctatagtgtacgccatactgga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37443322 |
tttgggttgtgcttctctgtactgtctttagtagaatgtttttacttttggtaggaaaccagtgttgtaaaatagcagctatagtgtacgccatactgga |
37443223 |
T |
|
| Q |
119 |
atttgaataaatcgttattgttttgcgatacgttatttgatatagttttgttaaatagtggctctagtgccattatagcattgtagcttagcagaatttg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || | |||||||||||||||||| |||||| |
|
|
| T |
37443222 |
atttgaataaatcgttattgttttgcgatacgttattcgatatagttttgttaaatagtggctctagtgtcactgtagcattgtagcttagcaaaatttg |
37443123 |
T |
|
| Q |
219 |
aacaaagtgttattttccatgatctgcgattctggtgaaaaccaacaagatattt |
273 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37443122 |
aacaaagtgttattttctgtgatctgcgattctggtgaaaaccaacaagatattt |
37443068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 39647292 - 39647259
Alignment:
| Q |
115 |
tggaatttgaataaatcgttattgttttgcgata |
148 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
39647292 |
tggaatttgaataaatcgttattgttctgcgata |
39647259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 34925316 - 34925263
Alignment:
| Q |
192 |
tatagcattgtagcttagcagaatttgaacaaagtgttattttccatgatctgc |
245 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
34925316 |
tatagcattgtagcatagcagaatttgaacaaactgctattttccacgatctgc |
34925263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 236
Target Start/End: Complemental strand, 11501559 - 11501488
Alignment:
| Q |
165 |
tttgttaaatagtggctctagtgccattatagcattgtagcttagcagaatttgaacaaagtgttattttcc |
236 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||| | |||| ||| ||||||||||||| ||||||||||| |
|
|
| T |
11501559 |
tttgtcaaatagtggctatagtagcattatagcactctagcatagtggaatttgaacaaactgttattttcc |
11501488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 4541583 - 4541645
Alignment:
| Q |
121 |
ttgaataaatcgttattgttttgcgatacgttatttgatatagttttgttaaatagtggctct |
183 |
Q |
| |
|
||||| |||||||||||||||||| ||| | |||||| || ||| |||| ||||||||||||| |
|
|
| T |
4541583 |
ttgaacaaatcgttattgttttgcaatatgctatttggtacagtgttgtcaaatagtggctct |
4541645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 10363462 - 10363499
Alignment:
| Q |
212 |
gaatttgaacaaagtgttattttccatgatctgcgatt |
249 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
10363462 |
gaatttgaacaaaatgctattttccatgatctgcgatt |
10363499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 21901327 - 21901372
Alignment:
| Q |
191 |
ttatagcattgtagcttagcagaatttgaacaaagtgttattttcc |
236 |
Q |
| |
|
||||| ||||||||| ||||||||||| ||||||||| |||||||| |
|
|
| T |
21901327 |
ttataacattgtagcgtagcagaatttaaacaaagtgctattttcc |
21901372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 38434185 - 38434242
Alignment:
| Q |
192 |
tatagcattgtagcttagcagaatttgaacaaagtgttattttccatgatctgcgatt |
249 |
Q |
| |
|
||||||| |||| | |||||||||||||||||| || |||||||| || ||||||||| |
|
|
| T |
38434185 |
tatagcactgtaacatagcagaatttgaacaaactgctattttccgtgttctgcgatt |
38434242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University