View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_16 (Length: 453)
Name: NF6866A_low_16
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_16 |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 143 - 438
Target Start/End: Complemental strand, 40399216 - 40398903
Alignment:
| Q |
143 |
gagtctagttcttaggaagttaaactttatcaagttatatgtttgcaaattggctggcagttgcccagtttatatacattatcaaatatatgacgaagaa |
242 |
Q |
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| T |
40399216 |
gagtctagttcttaggaagttaaactttatcaagttatatgtttgcaaattggctggcagtttcccagtttatatacattatcaaatatatgacgaagaa |
40399117 |
T |
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| Q |
243 |
gcatttgtcttgctctaccggttttatttaaatattcaac-----------------ttgttttaaaattcattattgcccggttaggaattgtgctgac |
325 |
Q |
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| T |
40399116 |
gcatttgtcttgctctaccggttttatttaaatattcaacttctttctgtgaatgttttgttttaaaattcattattgcccggttaggaattgtgctgac |
40399017 |
T |
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| Q |
326 |
agtccatttcttgttagtggtgagacatcc-tgaacaaggtgaatggggtaaagataccgaaggatgtgagctattgaaatgtatattctgttttagtgt |
424 |
Q |
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| T |
40399016 |
agtccatttcttgtaagtggtgagacatccttgaacaaggtgaatgaggtaaaactaccgaaggatgtgagctattgaaatgtatattctgttttagtgt |
40398917 |
T |
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| Q |
425 |
attttgtctgttca |
438 |
Q |
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| T |
40398916 |
attttgtttgttca |
40398903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 40399392 - 40399284
Alignment:
| Q |
22 |
atgactatgttagagatgactacaaagtcattcaacgtgtgagttatagttcacttnnnnnnnnnttgctgggatattgatgtgccgaattatgtgaaaa |
121 |
Q |
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| T |
40399392 |
atgactatgttagagatgactacaaagtcattcaacgtgtgagttatagttcactt-aaaaaaatttgttgggatattgatgcgccgaattatgtgaaaa |
40399294 |
T |
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| Q |
122 |
accttcatcc |
131 |
Q |
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| T |
40399293 |
accttcatcc |
40399284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 17635 - 17603
Alignment:
| Q |
22 |
atgactatgttagagatgactacaaagtcattc |
54 |
Q |
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| T |
17635 |
atgaccatgttagagatgactacaaagtcattc |
17603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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