View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_163 (Length: 281)
Name: NF6866A_low_163
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_163 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 281
Target Start/End: Original strand, 31440649 - 31440927
Alignment:
| Q |
3 |
atcaatggtggagaaggaggagagtacgctcgtatggtcaagttgcaacaagtaacagctcagaatgatgaaatcaagcattccaatcttcaattagaag |
102 |
Q |
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| T |
31440649 |
atcaatggtggagaaggaggagagtacgctcgtatggtcaagttgcaacaagtaacagctcagaatgatgaaatcaagcattccaatcttcaattagaag |
31440748 |
T |
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| Q |
103 |
gaaagagctctcacaggatgagtgttccacagagtccaggaatgagtttcaaatcaagcacaccgggcactccaatgttgtatcccttcagccagggatt |
202 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31440749 |
gaaagagctctcacaggatgagcattccacaaagtccaggaatgagtttcaaatcaagcacaccgggcactccaatgttgtatcccttcagccagggatt |
31440848 |
T |
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| Q |
203 |
ttccatcggcacaccttactcatattccatccagtatgatcatgatgatgatagttatgaagatgatttgaaaagatca |
281 |
Q |
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|||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31440849 |
ttccattggcacgccttactcatattctatccagtatgatcatgatgatgatagttatgaagatgattttaaaagatca |
31440927 |
T |
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