View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_168 (Length: 277)
Name: NF6866A_low_168
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_168 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 21642677 - 21642420
Alignment:
| Q |
14 |
agaatgaaaacatctcccaaggtttacgtcattcaacgtagaacaagctttaataacggaagatagagtaaaagcattgggttgaataggaaatgccaac |
113 |
Q |
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| T |
21642677 |
agaatgaaagcatctcccaaggtttacgtcatttaacgcagaacaagctttgataacagaagatagagtaaaagcattgggttgaacaggaaatgccaac |
21642578 |
T |
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| Q |
114 |
atttcgtagaataaagatatcgactgatgtggctggccggagcgagtgtaaccggagataagtgaagtatcagagataacatctttgacgtgaagtgagt |
213 |
Q |
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||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
21642577 |
atttcgtagaataaagatatcgattgatgtggcaggtcggagcgagtgtaaccggagataagtgaagtccatgagatgacatctttgacgtgaagtgagt |
21642478 |
T |
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| Q |
214 |
cgaagagatgacgggcgtgagataaatgggggccggggtttaatttaaagtaaagagt |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21642477 |
cgaagagatgacgggcgtgagataaatgggggccggggtttaatttaaagtaaagagt |
21642420 |
T |
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