View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6866A_low_17 (Length: 448)

Name: NF6866A_low_17
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6866A_low_17
NF6866A_low_17
[»] chr5 (5 HSPs)
chr5 (28-448)||(1501413-1501833)
chr5 (32-83)||(25956008-25956059)
chr5 (28-82)||(38280317-38280371)
chr5 (32-84)||(7886354-7886406)
chr5 (27-83)||(38951381-38951437)
[»] chr7 (10 HSPs)
chr7 (28-84)||(11765706-11765762)
chr7 (28-83)||(496683-496738)
chr7 (32-85)||(7527312-7527365)
chr7 (32-83)||(25185981-25186032)
chr7 (27-84)||(4649480-4649537)
chr7 (28-83)||(42535258-42535313)
chr7 (32-84)||(2286457-2286509)
chr7 (27-84)||(31427303-31427362)
chr7 (28-83)||(48057743-48057798)
chr7 (28-76)||(23844642-23844690)
[»] chr3 (5 HSPs)
chr3 (27-83)||(29836812-29836868)
chr3 (28-84)||(49786392-49786448)
chr3 (32-89)||(47940820-47940877)
chr3 (27-83)||(8436939-8436995)
chr3 (28-83)||(8152977-8153034)
[»] chr4 (1 HSPs)
chr4 (36-83)||(52055200-52055247)
[»] chr2 (2 HSPs)
chr2 (27-80)||(11828960-11829013)
chr2 (28-83)||(13922185-13922240)
[»] chr1 (4 HSPs)
chr1 (28-83)||(20186885-20186940)
chr1 (28-83)||(51787272-51787327)
chr1 (28-83)||(30339636-30339691)
chr1 (28-61)||(9673013-9673046)
[»] chr8 (2 HSPs)
chr8 (32-83)||(4076992-4077043)
chr8 (32-78)||(3780407-3780453)
[»] chr6 (1 HSPs)
chr6 (32-83)||(33594567-33594618)


Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 28 - 448
Target Start/End: Original strand, 1501413 - 1501833
Alignment:
Q  28 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactcaaaattatgaaccacagtaacgaaatcttttgcacctgaagagg 127  Q
    |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1501413 tttatgtggaggtttaagtgtgtatgtcacctatggatctgcatgtatcaccactcaaaattatgaaccacagtaatgaaatcttttgcacctgaagagg 1501512  T
Q  128 gagctttattagagcctagaggatcctcaaacatcaaaatgatttgattcaatgttgttaccnnnnnnncattgaggaaaaacttttacttgctcaggat 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||| ||||||||||||||||||||||||||    
T  1501513 gagctttattagagcctagaggatcctcaaacatcaaaatgatttgattcaatgttgttacctttttttcattaaggaaaaacttttacttgctcaggat 1501612  T
Q  228 tgctctgaacttcaattacttgtgtctccaatgtgaattcaagaacatttgtctagtatatatatgccaattttgttaagtttcttggtggtgtgcctaa 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1501613 tgctctgaacttcaattacttgtgtctccaatgtgaattcaagaacatttgtctagtatatatatgccaattttgttaagtttcttggtggtgtgtctaa 1501712  T
Q  328 tcttgagagagtttcatggctttatggatttcaaaagttaaccttttgttgttattatttaaagttgattcaacctagtttcacattcattcttttcaac 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1501713 tcttgagagagtttcatggctttatggatttcaaaagttaaccttttgttgttattatttaaagttgattcaacctagtttcacattcattcttttcaac 1501812  T
Q  428 agatgaatggtgttctattgt 448  Q
    |||||||||||||||||||||    
T  1501813 agatgaatggtgttctattgt 1501833  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 25956008 - 25956059
Alignment:
Q  32 tgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 83  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  25956008 tgtggaggtttaaatgtgtatgccacctatgagtgtgcatgtatcaccactc 25956059  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 38280317 - 38280371
Alignment:
Q  28 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccact 82  Q
    ||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  38280317 tttatgtggaggtttaagtgtgtataccacctatggatgtacatgtatcaccact 38280371  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 7886406 - 7886354
Alignment:
Q  32 tgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactca 84  Q
    |||||||||||||||||||||| ||||||| | | |||||| |||||||||||    
T  7886406 tgtggaggtttaagtgtgtatgtcacctataagtatgcatgaatcaccactca 7886354  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 38951437 - 38951381
Alignment:
Q  27 atttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 83  Q
    |||| ||| ||| ||||||| | ||||||| |||||||||||||||||||| |||||    
T  38951437 atttgtgttgagatttaagtatatatgccatctatgaatgtgcatgtatcatcactc 38951381  T

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Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 11765762 - 11765706
Alignment:
Q  28 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactca 84  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  11765762 tttatgtggaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactca 11765706  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 496738 - 496683
Alignment:
Q  28 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 83  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  496738 tttatgtggaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactc 496683  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 7527312 - 7527365
Alignment:
Q  32 tgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactcaa 85  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||| |||||    
T  7527312 tgtggaggtttaagtgtgtatgccaccaatgaatatgcatgtatcacccctcaa 7527365  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 25185981 - 25186032
Alignment:
Q  32 tgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 83  Q
    |||||||||||||||||||||| ||||||||| |||||||| ||||||||||    
T  25185981 tgtggaggtttaagtgtgtatgtcacctatgagtgtgcatgcatcaccactc 25186032  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 4649480 - 4649537
Alignment:
Q  27 atttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactca 84  Q
    |||||||||||| ||||| |||||||||||| ||||||| ||||| ||||||||||||    
T  4649480 atttatgtggagttttaaatgtgtatgccacttatgaatttgcatctatcaccactca 4649537  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 42535258 - 42535313
Alignment:
Q  28 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 83  Q
    |||||||||||||||||||||||||| ||||||||| ||| ||| ||||| |||||    
T  42535258 tttatgtggaggtttaagtgtgtatgtcacctatgagtgtacatatatcatcactc 42535313  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 2286509 - 2286457
Alignment:
Q  32 tgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactca 84  Q
    ||||||||||||||||||||||||||| ||   |||||||||||||| |||||    
T  2286509 tgtggaggtttaagtgtgtatgccaccaataggtgtgcatgtatcactactca 2286457  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 31427303 - 31427362
Alignment:
Q  27 atttatgtggaggtttaagtgtgtatgccac--ctatgaatgtgcatgtatcaccactca 84  Q
    ||||||| |||||||||| | ||||||||||  ||||| |||||||||||||||||||||    
T  31427303 atttatgcggaggtttaattatgtatgccacacctatggatgtgcatgtatcaccactca 31427362  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 48057743 - 48057798
Alignment:
Q  28 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 83  Q
    |||||||||| |||||| | |||||||||||||||  ||| |||||||||||||||    
T  48057743 tttatgtggaagtttaaatatgtatgccacctatgggtgtacatgtatcaccactc 48057798  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 23844690 - 23844642
Alignment:
Q  28 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatc 76  Q
    ||||||||||| ||| ||||||||||  ||||||| |||||||||||||    
T  23844690 tttatgtggagatttgagtgtgtatgttacctatggatgtgcatgtatc 23844642  T

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Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 29836812 - 29836868
Alignment:
Q  27 atttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 83  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29836812 atttgtgtggaggtttaagtgtgtatgccacctatgagtgtgcatgtatcaccactc 29836868  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 49786448 - 49786392
Alignment:
Q  28 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactca 84  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||||||| ||||    
T  49786448 tttatgtggaggtttaagtgtgtatgccacctatgggtgtacatgtatcaccgctca 49786392  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 47940877 - 47940820
Alignment:
Q  32 tgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactcaaaatt 89  Q
    ||||||||||||||||||||||||||| ||   |||||||||||||| ||||| ||||    
T  47940877 tgtggaggtttaagtgtgtatgccaccaataggtgtgcatgtatcactactcataatt 47940820  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 8436939 - 8436995
Alignment:
Q  27 atttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 83  Q
    |||||||| ||||||||| |||||||||||||||||  ||| ||| |||||||||||    
T  8436939 atttatgtagaggtttaaatgtgtatgccacctatgggtgtacatatatcaccactc 8436995  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 8153034 - 8152977
Alignment:
Q  28 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgc--atgtatcaccactc 83  Q
    |||||||||||||||| |||||||||||||||||   |||||  ||||||||||||||    
T  8153034 tttatgtggaggtttaggtgtgtatgccacctataggtgtgcatatgtatcaccactc 8152977  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 52055200 - 52055247
Alignment:
Q  36 gaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52055200 gaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 52055247  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 11829013 - 11828960
Alignment:
Q  27 atttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcacca 80  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  11829013 atttatgtggaggtttaagtgtgtatgccacctatgagtgtgcatgtctcacca 11828960  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 13922240 - 13922185
Alignment:
Q  28 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 83  Q
    |||| |||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  13922240 tttacgtggaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactc 13922185  T

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Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 20186885 - 20186940
Alignment:
Q  28 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 83  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||||||    
T  20186885 tttatgtggaggtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 20186940  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 51787327 - 51787272
Alignment:
Q  28 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 83  Q
    |||||||| |||||||||||||||||||||||||| |||| |||||||||||||||    
T  51787327 tttatgtgaaggtttaagtgtgtatgccacctatggatgtacatgtatcaccactc 51787272  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 30339691 - 30339636
Alignment:
Q  28 tttatgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 83  Q
    ||||||| |||||||||||||||||||||||||||  ||| |||||||||||||||    
T  30339691 tttatgtagaggtttaagtgtgtatgccacctatgggtgtacatgtatcaccactc 30339636  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 9673013 - 9673046
Alignment:
Q  28 tttatgtggaggtttaagtgtgtatgccacctat 61  Q
    ||||||||||||||||||||||||||||||||||    
T  9673013 tttatgtggaggtttaagtgtgtatgccacctat 9673046  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 4076992 - 4077043
Alignment:
Q  32 tgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 83  Q
    |||||||||||||||||||||||||||||||  | ||||||||||| |||||    
T  4076992 tgtggaggtttaagtgtgtatgccacctatgggtatgcatgtatcatcactc 4077043  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 3780407 - 3780453
Alignment:
Q  32 tgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcac 78  Q
    ||||||||||| ||||||||||||||||||| |||| ||||||||||    
T  3780407 tgtggaggtttgagtgtgtatgccacctatggatgtacatgtatcac 3780453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 33594567 - 33594618
Alignment:
Q  32 tgtggaggtttaagtgtgtatgccacctatgaatgtgcatgtatcaccactc 83  Q
    |||| |||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  33594567 tgtgaaggtttaagtgtgtatgccaccaatggatgtgcatgtatcactactc 33594618  T

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