View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6866A_low_173 (Length: 273)

Name: NF6866A_low_173
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6866A_low_173
NF6866A_low_173
[»] chr2 (17 HSPs)
chr2 (7-273)||(9292323-9292589)
chr2 (7-265)||(9357586-9357841)
chr2 (69-239)||(9283721-9283891)
chr2 (7-247)||(9316449-9316689)
chr2 (66-247)||(9329020-9329201)
chr2 (45-236)||(10353553-10353744)
chr2 (66-245)||(9321399-9321578)
chr2 (68-239)||(9060665-9060836)
chr2 (175-239)||(10336273-10336337)
chr2 (181-239)||(8573142-8573200)
chr2 (7-145)||(9275044-9275182)
chr2 (69-138)||(10372391-10372460)
chr2 (175-237)||(10372301-10372363)
chr2 (170-239)||(7115271-7115340)
chr2 (180-265)||(9274915-9275000)
chr2 (175-232)||(10348227-10348284)
chr2 (45-138)||(10348312-10348405)
[»] chr3 (1 HSPs)
chr3 (7-239)||(37462927-37463159)
[»] chr4 (1 HSPs)
chr4 (45-237)||(26575304-26575496)
[»] scaffold0667 (2 HSPs)
scaffold0667 (175-239)||(4912-4976)
scaffold0667 (7-127)||(5018-5138)
[»] chr8 (2 HSPs)
chr8 (177-239)||(41966362-41966424)
chr8 (69-125)||(41966254-41966310)
[»] chr1 (4 HSPs)
chr1 (177-238)||(29467429-29467489)
chr1 (180-238)||(29452955-29453013)
chr1 (181-238)||(29442970-29443027)
chr1 (177-234)||(29423702-29423759)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 7 - 273
Target Start/End: Complemental strand, 9292589 - 9292323
Alignment:
Q  7 gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacatag 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9292589 gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacatcg 9292490  T
Q  107 gattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatccatta 206  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9292489 gattatcccttttctccctcttgctatccctaacattctcgagtctgaaaacattgatcgcgccggtgtatgcgttcacggcttcggttatgatccatta 9292390  T
Q  207 accggcgattacaaactcctcagaatctcttggatagccgacctacattactcttttgatccacagg 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292389 accggcgattacaaactcctcagaatctcttggatagccgacctacattactcttttgatccacagg 9292323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 7 - 265
Target Start/End: Complemental strand, 9357841 - 9357586
Alignment:
Q  7 gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacatag 106  Q
    ||||||||||||||||||| |||||| || |||||   |||| ||||||| ||||| | ||||||||| || ||| ||||| |||||  | |||||||      
T  9357841 gtaacggcctcctcgccatctccaatggcgaaatcgctttcaggcatcctaacgccgccaacgaaatctcaatctggaaccataacatccgtaaacatca 9357742  T
Q  107 gattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatccatta 206  Q
     ||||||||||| ||||||||| ||||||||||||||||    |||   ||||||||  |||   |||||||||||||||||||||||| |||||| |||    
T  9357741 cattatccctttcctccctcttcctatccctaacattctccgatctttcaacattgacggcg---gtgtatgcgttcacggcttcggttttgatccttta 9357645  T
Q  207 accggcgattacaaactcctcagaatctcttggatagccgacctacattactcttttga 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9357644 accggcgattacaaactcctcagaatctcttggatagccgacctacattactcttttga 9357586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 69 - 239
Target Start/End: Original strand, 9283721 - 9283891
Alignment:
Q  69 gaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcg 168  Q
    ||||||||| ||| |||| ||||||| | ||||||| ||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| ||||    
T  9283721 gaaatcacaatctggaacactaacacccgtaaacattggattatcccttttctccctcttcctatccctaacattgtggagtctgaaaacattgaacgcg 9283820  T
Q  169 caggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttgg 239  Q
      ||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||    
T  9283821 gcggtgtatgcattcacggcttcggttttgatcctttaaccggcgattacaaactcctccgaatctcttgg 9283891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 9316689 - 9316449
Alignment:
Q  7 gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacatag 106  Q
    |||||||||| ||||||||||||||| | ||||||   |||| ||||||||||| | | |||||||||||| ||| |||||||||||| | ||||||| |    
T  9316689 gtaacggccttctcgccatttccaatggtcaaatcgctttcatgcatccttacggcgccaacgaaatcacaatctggaaccctaacacccgtaaacatcg 9316590  T
Q  107 gattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatccatta 206  Q
     ||||||||||| || |||||||||||||||||||||||||| ||||| ||     ||||||  ||| ||||||||||||||||||||| |||||||| |    
T  9316589 tattatccctttccttcctcttgctatccctaacattcttgaatctgacaaacccaatcgcggcggtatatgcgttcacggcttcggttttgatccatca 9316490  T
Q  207 accggcgattacaaactcctcagaatctcttggatagccga 247  Q
    || || |||||||||||||||||||| |||||||| |||||    
T  9316489 acaggtgattacaaactcctcagaatttcttggatggccga 9316449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 66 - 247
Target Start/End: Complemental strand, 9329201 - 9329020
Alignment:
Q  66 aacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatc 165  Q
    |||||||||||| ||| |||||||||||| | ||||||| | ||||||||||| || |||||||||||||||||||||||||| ||||| |||||  |||    
T  9329201 aacgaaatcacaatctggaaccctaacacccgtaaacatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccatc 9329102  T
Q  166 gcgcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttggatagccga 247  Q
    ||       ||||||||||||| ||||||| |||||| ||| |||| ||||||||||||||||||||| |||||||||||||    
T  9329101 gcttctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaatcgcttggatagccga 9329020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 236
Target Start/End: Complemental strand, 10353744 - 10353553
Alignment:
Q  45 ttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattc 144  Q
    |||||||||||| ||||||| |||||||||||| | | |||||| ||||| | ||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  10353744 ttcacgcatcctaacgcccccaacgaaatcacaatatggaaccccaacacccgtaagcatcggattatcccttttctccctcttcctatccctaacattc 10353645  T
Q  145 ttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctct 236  Q
    |  | ||||| |||  | | || |   |  |||||||||| |||||||||| |||| |  || |||||||||||||||||||||||||||||    
T  10353644 tccaatctgacaaccctaaccgtggctgcttatgcgttcatggcttcggttttgattctgtatccggcgattacaaactcctcagaatctct 10353553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 245
Target Start/End: Complemental strand, 9321578 - 9321399
Alignment:
Q  66 aacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatc 165  Q
    |||||||||||| ||| |||||||| ||||| ||| ||| | || |||||||| || |||||| |||||||| ||||| | || || || |||||  |||    
T  9321578 aacgaaatcacaatctggaaccctagcactcgtaagcatcgtatgatccctttcctacctcttcctatccctgacattatggaatccgacaacatcaatc 9321479  T
Q  166 gc-gcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttggatagcc 245  Q
    || || | | |||||||||| || ||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||    
T  9321478 gctgctgct-tatgcgttcatggtttcggttttgatcctttaaccggcgattacaaactcctcagaatctcttggttagcc 9321399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 239
Target Start/End: Original strand, 9060665 - 9060836
Alignment:
Q  68 cgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgc 167  Q
    ||||| |||| ||| |||||||||||| |  ||| || |||  ||||||||| |||||||| ||||||||||||||   || ||||| |||    |||||    
T  9060665 cgaaaccacaatctggaaccctaacacccgcaaagatcggaccatcccttttatccctcttcctatccctaacattgaggactctgacaaccccaatcgc 9060764  T
Q  168 gcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttgg 239  Q
    |  ||| ||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| |||||    
T  9060765 ggcggtatatgcgttcacggcttcggttttgatccattcaccgccgattacaaactcctcagaatcacttgg 9060836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 10336337 - 10336273
Alignment:
Q  175 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttgg 239  Q
    ||||||||||||| ||||||| |||| ||||| ||| ||||||||||||||||||||||||||||    
T  10336337 tatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctcttgg 10336273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 8573142 - 8573200
Alignment:
Q  181 ttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttgg 239  Q
    ||||||||||||||| ||||| |||||||| |||||||||||||||| |||||||||||    
T  8573142 ttcacggcttcggttttgatctattaaccgccgattacaaactcctccgaatctcttgg 8573200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 145
Target Start/End: Complemental strand, 9275182 - 9275044
Alignment:
Q  7 gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacatag 106  Q
    ||||||||||| | || || |||||| |||||| |  ||||| ||||||| |||   | || ||||| ||| ||| ||||||||||||   ||||||| |    
T  9275182 gtaacggcctcattgctatctccaatggccaaaccgccttcaggcatcctgacgatgcaaatgaaattacaatctggaaccctaacaccggtaaacatcg 9275083  T
Q  107 gattatcccttttctccctcttgctatccctaacattct 145  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  9275082 gattatcccttttctccctcttcctatacctaacattct 9275044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 10372460 - 10372391
Alignment:
Q  69 gaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatcccta 138  Q
    ||||||||| ||| |||||||||||| | |||||||||| |||||||||||||||||||| |||| ||||    
T  10372460 gaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 10372391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 10372363 - 10372301
Alignment:
Q  175 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctctt 237  Q
    |||||||||| |||||||||| |||| | ||| |||||||| |||||||||||||||||||||    
T  10372363 tatgcgttcatggcttcggttttgattctttatccggcgatcacaaactcctcagaatctctt 10372301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 7115271 - 7115340
Alignment:
Q  170 aggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttgg 239  Q
    |||| ||||| ||||||||||||||| |||||| ||||| |  ||||||||||| |||||||||||||||    
T  7115271 aggtctatgctttcacggcttcggttttgatcctttaacagatgattacaaacttctcagaatctcttgg 7115340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 265
Target Start/End: Complemental strand, 9275000 - 9274915
Alignment:
Q  180 gttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttggatagccgacctacattactcttttga 265  Q
    |||||||| || |||| |||||| ||| |||||||||| ||||| ||||||||||| ||| |||| ||  ||||||||||||||||    
T  9275000 gttcacggttttggttttgatcctttatccggcgattataaacttctcagaatctcatggttagctgatatacattactcttttga 9274915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 10348284 - 10348227
Alignment:
Q  175 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaat 232  Q
    ||||||||||||||||||||| ||||| | || |||| ||||||||||||||||||||    
T  10348284 tatgcgttcacggcttcggttttgatcaaatatccggtgattacaaactcctcagaat 10348227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 10348405 - 10348312
Alignment:
Q  45 ttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatcccta 138  Q
    |||||||||||| ||  ||  |||||||||||| ||| |||||||||||| | |||||||   ||||||||||||||||||||| |||| ||||    
T  10348405 ttcacgcatcctaacaacctcaacgaaatcacaatctggaaccctaacacccgtaaacatcacattatcccttttctccctcttcctattccta 10348312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 239
Target Start/End: Complemental strand, 37463159 - 37462927
Alignment:
Q  7 gtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacatag 106  Q
    |||||||||||||||| || |||||| ||||||||   |||||||||||| ||||| | |||||||||||| ||| |||||||||||| | |||||||      
T  37463159 gtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaaccctaacacacgtaaacatct 37463060  T
Q  107 gattatcccttttctccctcttgctatccctaacattcttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatccatta 206  Q
    ||||||||||||||||||| |  || ||||| ||||| | || ||  | |||  | | ||||   |  ||||||||||||||||||||| |||| | |||    
T  37463059 gattatcccttttctccctatgcctgtcccttacattatggaatcaaacaaccctaaccgcggctgcttatgcgttcacggcttcggttttgattcttta 37462960  T
Q  207 accggcgattacaaactcctcagaatctcttgg 239  Q
    |||||||||||||||||||||||||||||||||    
T  37462959 accggcgattacaaactcctcagaatctcttgg 37462927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 45 - 237
Target Start/End: Complemental strand, 26575496 - 26575304
Alignment:
Q  45 ttcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccctcttgctatccctaacattc 144  Q
    |||||||||||  ||||||| ||||||||| || ||| ||||||| ||||   |||| || ||||||||||||||||||||||| | |||||||||||||    
T  26575496 ttcacgcatcccaacgcccccaacgaaatcgcaatctggaacccttacaccggtaaatatcggattatcccttttctccctcttcccatccctaacattc 26575397  T
Q  145 ttgagtctgaaaacattgatcgcgcaggtgtatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctctt 237  Q
    |  | ||||| |||  | |||| |   |  ||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||||    
T  26575396 tccaatctgacaaccctaatcgtggctgcttatgcgttcacggcttcggttttgattctttatccggcgattacaaactcctcagaatctctt 26575304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 4976 - 4912
Alignment:
Q  175 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttgg 239  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| ||||||||    
T  4976 tatgcgttcacggcttcggttttgatcctttaaccggcgattacaaaatcctcagactctcttgg 4912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 5138 - 5018
Alignment:
Q  7 gtaacggcctcctcgccatttccaatagccaaatctgct-tcacgcatccttacgcccctaacgaaatcacagtcttgaaccctaacactcataaacata 105  Q
    ||||||||||||||||| |||||||  || ||||| ||| |||  |||||| ||||| | |||||||||||| ||| |||||||||||  | |||||||     
T  5138 gtaacggcctcctcgccgtttccaacggcgaaatc-gctctcagacatcctaacgccgccaacgaaatcacaatctggaaccctaacatccgtaaacatc 5040  T
Q  106 ggattatcccttttctccctct 127  Q
      ||||||||||||||||||||    
T  5039 acattatcccttttctccctct 5018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 41966362 - 41966424
Alignment:
Q  177 tgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttgg 239  Q
    ||||||||||| ||||||| ||||||||||||| ||||| |||||||||||||||||||||||    
T  41966362 tgcgttcacggattcggttttgatccattaaccagcgatcacaaactcctcagaatctcttgg 41966424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 41966254 - 41966310
Alignment:
Q  69 gaaatcacagtcttgaaccctaacactcataaacataggattatcccttttctccct 125  Q
    ||||||||| ||| |||||||||||    ||||||| ||||||||||||||||||||    
T  41966254 gaaatcacattctggaaccctaacatctgtaaacatcggattatcccttttctccct 41966310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 29467429 - 29467489
Alignment:
Q  177 tgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttg 238  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||||| ||||||||||||||    
T  29467429 tgcgttcacggcttcggttttgatccattaaccgatgattacaaact-ctcagaatctcttg 29467489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 29452955 - 29453013
Alignment:
Q  180 gttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttg 238  Q
    ||||||||||| |||| |||||| |||| || |||||||||||||||||||||||||||    
T  29452955 gttcacggctttggttttgatccgttaaacgtcgattacaaactcctcagaatctcttg 29453013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 29442970 - 29443027
Alignment:
Q  181 ttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctcttg 238  Q
    ||||||||||||||| ||||||||| |||  ||||||||||||| |||||||||||||    
T  29442970 ttcacggcttcggttttgatccattgaccaacgattacaaactcatcagaatctcttg 29443027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 29423759 - 29423702
Alignment:
Q  177 tgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatct 234  Q
    |||||| |||||||||||| |||||||||||| |  |||||||||||||||| |||||    
T  29423759 tgcgtttacggcttcggttttgatccattaactgatgattacaaactcctcacaatct 29423702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University