View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_179 (Length: 270)
Name: NF6866A_low_179
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_179 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 75 - 256
Target Start/End: Original strand, 834778 - 834961
Alignment:
| Q |
75 |
ggacatcaaggaagacttagaggtatatacaaa-----gcttcttaatttctccttttattcttcaattcaatcacattccctttgatttatttgtcaac |
169 |
Q |
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| T |
834778 |
ggacaacaaggaagacttagaggtatatacaaattaaagcttcttaatttctccttttattcttcaattcaatcacattccctttgatttatttgtcaac |
834877 |
T |
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| Q |
170 |
tttagcatatactattattttgtttatcattatttcatatttgtaaccatgtttgttgcaccttcttagtgcacttatttgtatatt |
256 |
Q |
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| T |
834878 |
tttagcatatac---tattttgtttatcattatttcatatttgtaaccatgtttgttgcaccttcttagtgcacctttttgtatatt |
834961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 75 - 235
Target Start/End: Original strand, 813089 - 813244
Alignment:
| Q |
75 |
ggacatcaaggaagacttagaggtatatacaaagcttcttaatttctccttttattcttcaattcaatcacattccctttgatttatttgtcaactttag |
174 |
Q |
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| T |
813089 |
ggacaacaaggaagactgagaggtatatgcaaaacttcctatcttctc--tttattcttcaattcaatcacaattcctttggtttatttgttaacttcaa |
813186 |
T |
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| Q |
175 |
catatactattattttgtttatcattatttcatatttgtaaccatgtttgttgcaccttct |
235 |
Q |
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| T |
813187 |
catatac---ttttttgtttttcattagttcatatttgtactcatgtttgttgcaccttct |
813244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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