View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6866A_low_182 (Length: 269)

Name: NF6866A_low_182
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6866A_low_182
NF6866A_low_182
[»] chr3 (4 HSPs)
chr3 (15-269)||(11897151-11897405)
chr3 (15-269)||(26432588-26432842)
chr3 (116-200)||(23424570-23424654)
chr3 (159-207)||(49149803-49149851)
[»] chr8 (3 HSPs)
chr8 (15-269)||(23132475-23132729)
chr8 (116-207)||(26587289-26587380)
chr8 (20-178)||(14760016-14760174)
[»] chr1 (4 HSPs)
chr1 (15-269)||(20284852-20285106)
chr1 (107-214)||(50236550-50236657)
chr1 (119-200)||(50451967-50452048)
chr1 (159-207)||(23465412-23465460)
[»] chr2 (9 HSPs)
chr2 (15-269)||(14653570-14653824)
chr2 (62-195)||(35135159-35135292)
chr2 (62-195)||(40328252-40328385)
chr2 (119-268)||(26791322-26791471)
chr2 (62-195)||(3778988-3779121)
chr2 (107-207)||(16322511-16322611)
chr2 (62-195)||(19265490-19265623)
chr2 (119-195)||(573266-573342)
chr2 (114-200)||(42403209-42403295)
[»] scaffold0036 (1 HSPs)
scaffold0036 (104-209)||(75967-76072)
[»] chr5 (3 HSPs)
chr5 (119-210)||(32874457-32874548)
chr5 (119-194)||(7817210-7817285)
chr5 (116-193)||(23620615-23620692)
[»] chr4 (3 HSPs)
chr4 (17-269)||(54477303-54477554)
chr4 (119-200)||(3881787-3881868)
chr4 (116-201)||(46784469-46784554)
[»] chr6 (3 HSPs)
chr6 (116-214)||(24990660-24990758)
chr6 (103-207)||(13599648-13599752)
chr6 (116-200)||(24893833-24893917)
[»] chr7 (2 HSPs)
chr7 (119-264)||(1579159-1579304)
chr7 (103-207)||(16769946-16770050)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 269
Target Start/End: Complemental strand, 11897405 - 11897151
Alignment:
Q  15 ggacatcatctgcaaataggagatgggataaatgcggccctgtatgggtgatttggatgggtgcccatcttccttgggtgactgctgagttgatagcagc 114  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  ||||||||||||||||| |||    
T  11897405 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggacgactgctgagttgatagtagc 11897306  T
Q  115 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897305 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 11897206  T
Q  215 taaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897205 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 11897151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 26432588 - 26432842
Alignment:
Q  15 ggacatcatctgcaaataggagatgggataaatgcggccctgtatgggtgatttggatgggtgcccatcttccttgggtgactgctgagttgatagcagc 114  Q
    ||||||||| |||||| ||||| ||||||||||||||||| ||| | |||||||| || ||| ||||||||||||||||||| || ||||||||||||||    
T  26432588 ggacatcatttgcaaaaaggaggtgggataaatgcggccccgtaggagtgatttgaatcggttcccatcttccttgggtgacggcggagttgatagcagc 26432687  T
Q  115 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 214  Q
     || |||||||||||||||| |||||| ||||||||||||||  |||||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||    
T  26432688 ggatagcttttccatgcaaatgatgaagagataaggggacaatggatcaccttgtcggagaccatgagaaggtttgaaagacggcaacttgttcccattc 26432787  T
Q  215 taaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
     |||||||||||||  | |  ||||  || |||||||||||||| ||||||||||    
T  26432788 caaagtatagagtagtttgatgaagagacacaatgcatgatgagtttgatggtga 26432842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 23424654 - 23424570
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggca 200  Q
    ||||||||||||||||| || |||||||||||||| || | | | |||||||||| ||| ||||| |  ||||||||||| ||||    
T  23424654 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggca 23424570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 49149803 - 49149851
Alignment:
Q  159 gatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgtt 207  Q
    ||||||||||||| || ||||||| |||||||||| ||||||| |||||    
T  49149803 gatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgtt 49149851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 23132475 - 23132729
Alignment:
Q  15 ggacatcatctgcaaataggagatgggataaatgcggccctgtatgggtgatttggatgggtgcccatcttccttgggtgactgctgagttgatagcagc 114  Q
    |||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23132475 ggacatcatctgcaaataggagatgggataaatggggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 23132574  T
Q  115 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132575 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 23132674  T
Q  215 taaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
     |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23132675 caaagtatagagtaactaggagaagctacgcaatgcatgatgaacttgatggtga 23132729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 26587380 - 26587289
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgtt 207  Q
    ||||| || ||||| ||||| ||||| || || || |||||  | |||||||||||||||||||||| ||||||||| || ||||| |||||    
T  26587380 gaaagtttctccatacaaagaatgaagaggtagggagacaatgggtcaccttgtcggaggccatgagtaggcttgaaggggggcaatttgtt 26587289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 14760174 - 14760016
Alignment:
Q  20 tcatctgcaaataggagatgggataaatgcggccctgtatgggtgatttggatgggtgcccatcttccttgggtgactgctgagttgatagcagctgaaa 119  Q
    |||||||||||||| || || ||||  || ||||| ||||  |||||||| |  ||| |||| ||||||||  |||| ||||| || ||||||   || |    
T  14760174 tcatctgcaaatagtaggtgagatatctggggccccgtatttgtgatttgaaccggttcccaacttccttgattgaccgctgaatttatagcaatagaga 14760075  T
Q  120 gcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggcca 178  Q
    |||||||||| ||||| ||||| || || ||||||||| |||| ||||| || ||||||    
T  14760074 gcttttccatacaaagaatgaagaggtatggggacaacggatctccttggcgaaggcca 14760016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 269
Target Start/End: Complemental strand, 20285106 - 20284852
Alignment:
Q  15 ggacatcatctgcaaataggagatgggataaatgcggccctgtatgggtgatttggatgggtgcccatcttccttgggtgactgctgagttgatagcagc 114  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20285106 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 20285007  T
Q  115 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||   |||||||||    
T  20285006 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttc 20284907  T
Q  215 taaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20284906 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 20284852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 214
Target Start/End: Original strand, 50236550 - 50236657
Alignment:
Q  107 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgt 206  Q
    |||||| |||| || || ||||| || | ||||||||| |||||||| | | ||||||||| || ||||||||||| |||||||||||| |||| |||||    
T  50236550 atagcaactgatagtttctccatacacaagatgaaaaggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgt 50236649  T
Q  207 tcccgttc 214  Q
    ||||||||    
T  50236650 tcccgttc 50236657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 50452048 - 50451967
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggca 200  Q
    ||||| ||||| ||||| ||||| || ||||| || | | |||||||||||||||||||||| | ||| |||||| ||||||    
T  50452048 agcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggca 50451967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 23465460 - 23465412
Alignment:
Q  159 gatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgtt 207  Q
    ||||||||||||| || ||||||| |||||||||| ||||||| |||||    
T  23465460 gatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgtt 23465412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 269
Target Start/End: Original strand, 14653570 - 14653824
Alignment:
Q  15 ggacatcatctgcaaataggagatgggataaatgcggccctgtatgggtgatttggatgggtgcccatcttccttgggtgactgctgagttgatagcagc 114  Q
    |||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  14653570 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggagtgatttggatgggtgcccatcttccttgggcaactgctgagtttatagcagc 14653669  T
Q  115 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 214  Q
     || ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  14653670 ggatagcttttccatgcaaaggatgaaaaaataaggggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattc 14653769  T
Q  215 taaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
     |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14653770 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtga 14653824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 195
Target Start/End: Original strand, 35135159 - 35135292
Alignment:
Q  62 gtgatttggatgggtgcccatcttccttgggtgactgctgagttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacagat 161  Q
    |||||||| || ||| ||||||| |||||| |||| || || ||||| ||| | || || |||||||| || ||||||||||||||||| |||||| | |    
T  35135159 gtgatttgtatcggttcccatctcccttggttgacagcggaattgattgcaacagagagtttttccatacataggatgaaaagataaggagacaacgggt 35135258  T
Q  162 caccttgtcggaggccatgagaaggcttgaaagg 195  Q
    ||||||| || || ||||||| ||||||||||||    
T  35135259 caccttgacgaagtccatgagtaggcttgaaagg 35135292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 195
Target Start/End: Complemental strand, 40328385 - 40328252
Alignment:
Q  62 gtgatttggatgggtgcccatcttccttgggtgactgctgagttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacagat 161  Q
    |||||||| || ||| ||||||| |||||| |||| || || ||||| ||| | || || |||||||| || ||||||||||||||||| |||||| | |    
T  40328385 gtgatttgtatcggttcccatctcccttggttgacagcggaattgattgcaacagagagtttttccatacataggatgaaaagataaggagacaacgggt 40328286  T
Q  162 caccttgtcggaggccatgagaaggcttgaaagg 195  Q
    ||||||| || || ||||||| ||||||||||||    
T  40328285 caccttgacgaagtccatgagtaggcttgaaagg 40328252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 268
Target Start/End: Complemental strand, 26791471 - 26791322
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttctaaa 218  Q
    ||||| ||||||||||| || ||||| || ||||| | | ||||||| || | ||||||||||| ||||| |||||| |||||| | || || ||| |||    
T  26791471 agcttctccatgcaaagaataaaaaggtacggggaaagcggatcaccctgcctgaggccatgagtaggctcgaaaggaggcaacctatttccattccaaa 26791372  T
Q  219 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtg 268  Q
    | |||||| | || |  ||||  |||||||||||||||||||||||||||    
T  26791371 gaatagagaagctggatgaagtaacgcaatgcatgatgagcttgatggtg 26791322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 195
Target Start/End: Original strand, 3778988 - 3779121
Alignment:
Q  62 gtgatttggatgggtgcccatcttccttgggtgactgctgagttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacagat 161  Q
    |||||||| || ||| ||||||| |||||  |||| || || ||||| ||| | || || |||||||| || ||||||||||||||||| |||| | | |    
T  3778988 gtgatttgtattggttcccatctcccttgattgacagcggaattgattgcaacagagagtttttccatacagaggatgaaaagataaggagacagcgggt 3779087  T
Q  162 caccttgtcggaggccatgagaaggcttgaaagg 195  Q
    ||||||| || || ||||||| ||||||||||||    
T  3779088 caccttgacgaagtccatgagtaggcttgaaagg 3779121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 16322611 - 16322511
Alignment:
Q  107 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgt 206  Q
    |||||| | ||||| |||||||||||||| |||||||| || || || | | | ||||||||||| ||||||||||  ||||||||||| |||| |||||    
T  16322611 atagcaacagaaagtttttccatgcaaagtatgaaaaggtacggagaaagcgggtcaccttgtcgaaggccatgagtgggcttgaaaggaggcatcttgt 16322512  T
Q  207 t 207  Q
    |    
T  16322511 t 16322511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 195
Target Start/End: Complemental strand, 19265623 - 19265490
Alignment:
Q  62 gtgatttggatgggtgcccatcttccttgggtgactgctgagttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacagat 161  Q
    |||||||| || ||| ||||||| |||||  |||| || || ||||| ||| | || || ||||||||  | ||||||||||||||||| |||| | | |    
T  19265623 gtgatttgtattggttcccatctcccttgattgacagcggaattgattgcaacagagagtttttccatatagaggatgaaaagataaggagacagcgggt 19265524  T
Q  162 caccttgtcggaggccatgagaaggcttgaaagg 195  Q
    ||||||| || || ||||||| ||||||||||||    
T  19265523 caccttgacgaagtccatgagtaggcttgaaagg 19265490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 573342 - 573266
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaagg 195  Q
    ||||| ||||||||||||||||| || ||||| || | | |||||||||||| ||||||||| ||||| || |||||    
T  573342 agcttctccatgcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggccatgggaaggtttaaaagg 573266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 42403209 - 42403295
Alignment:
Q  114 ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggca 200  Q
    ||||||||||||||||||| || || || |||||||| || |   | |||||||| |||||||||||||  ||||||||||| ||||    
T  42403209 ctgaaagcttttccatgcacagtataaatagataaggtgagagagggtcaccttgccggaggccatgagtgggcttgaaaggaggca 42403295  T

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Target: scaffold0036 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 209
Target Start/End: Complemental strand, 76072 - 75967
Alignment:
Q  104 ttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggcaact 203  Q
    ||||||||| | || ||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||||| ||||||||| |  |||| ||    
T  76072 ttgatagcaacagagagcttttccatgcaaaggatgaaaagataaggggacaactggtcaccttgtctgagaccatgagtaggcttgaaggaaggcagct 75973  T
Q  204 tgttcc 209  Q
    ||||||    
T  75972 tgttcc 75967  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 32874457 - 32874548
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttccc 210  Q
    |||||||||||||||| |||||| | ||| || || | | | || ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  32874457 agcttttccatgcaaatgatgaataaatagggagagagcgggtctccttggcggaggccatgagaaggcttgaaaggaggcaacttgttccc 32874548  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 7817285 - 7817210
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaag 194  Q
    ||||||||||||||||| |||||||| ||||| || ||  | ||||| |||| ||| ||||||| |||||||||||    
T  7817285 agcttttccatgcaaagaatgaaaaggtaaggagataaagggtcaccctgtctgagaccatgagtaggcttgaaag 7817210  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 23620615 - 23620692
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaa 193  Q
    ||||| |||||||| ||||| ||||| || || || ||||||| ||||||||||| ||| |||||||  |||||||||    
T  23620615 gaaagattttccatacaaagaatgaataggtagggagacaacatatcaccttgtctgagaccatgagtgggcttgaaa 23620692  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 269
Target Start/End: Original strand, 54477303 - 54477554
Alignment:
Q  17 acatcatctgcaaataggagatgggataaatgcggccctgtatgggtgatttggatgggtgcccatcttccttgggtgactgctgagttgatagcagctg 116  Q
    |||||||||||||| ||||| || ||||  || |||||  |||  ||||||||||| ||| ||||  | |||||  ||||  |||| |||||||||   |    
T  54477303 acatcatctgcaaagaggaggtgagatatttggggcccc-tatttgtgatttggattggttcccaattcccttgattgacgactgaattgatagcaatag 54477401  T
Q  117 aaagcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttcta 216  Q
    | || |||||||||||||| ||||| ||||||||||||||  |||||||||| || || ||||| | |||||||||||  || | |||||| || ||| |    
T  54477402 agagattttccatgcaaagaatgaagagataaggggacaaaggatcaccttggcgcagaccatgtgtaggcttgaaagatggaagcttgtttccattcca 54477501  T
Q  217 aagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtga 269  Q
    ||| ||| ||||  | |  || |  || |||||||||||||||||||||||||    
T  54477502 aaggataaagtattttgatgatgaaacacaatgcatgatgagcttgatggtga 54477554  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 3881868 - 3881787
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggca 200  Q
    ||||||||||| ||||| ||||| || ||| | || | | |||||||||||||||||||||| | ||| |||||| ||||||    
T  3881868 agcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggca 3881787  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 46784469 - 46784554
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggcaa 201  Q
    ||||| |||| ||||||||||||||| || || || || |   ||||||||||||  |||||||||| ||| ||||||||||||||    
T  46784469 gaaagttttttcatgcaaaggatgaagaggtagggagatagaggatcaccttgtctaaggccatgagtaggtttgaaaggcggcaa 46784554  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 24990660 - 24990758
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 214  Q
    |||||||| ||||||||||| |||||||||||||| || | | | |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| ||||||    
T  24990660 gaaagcttctccatgcaaagaatgaaaagataaggagagagcgggtcaccttgtctgagaccatgggtgggcttgaaagggggcattttgttaccgttc 24990758  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 207
Target Start/End: Complemental strand, 13599752 - 13599648
Alignment:
Q  103 gttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggcaac 202  Q
    |||||| ||||||||||| |||||||| || | |||||| |||||||| || |   |||||||||| |||||  |||||| |||||||||  |||| |||    
T  13599752 gttgatggcagctgaaagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgacggagatcatgagtaggcttgaattgcggaaac 13599653  T
Q  203 ttgtt 207  Q
    |||||    
T  13599652 ttgtt 13599648  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 24893833 - 24893917
Alignment:
Q  116 gaaagcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggca 200  Q
    ||||||||||||||||| || |||||||||||||| || | | | |||||||||| ||| ||||| |  ||||||||||| ||||    
T  24893833 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggca 24893917  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 264
Target Start/End: Original strand, 1579159 - 1579304
Alignment:
Q  119 agcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttctaaa 218  Q
    ||||||||||||||||| || || || |||||||| | | ||||||| |||| ||| ||||||| ||| |  || || ||||||||||| |  ||||| |    
T  1579159 agcttttccatgcaaagaataaagaggtaaggggagagcggatcaccctgtctgagcccatgagtaggatgaaagggaggcaacttgtttctattctaga 1579258  T
Q  219 gtatagagtaactaggagaagctacgcaatgcatgatgagcttgat 264  Q
    | |||||| || | | |||||  || |||||||||||||| |||||    
T  1579259 gaatagagaaagttgaagaagaaacacaatgcatgatgagattgat 1579304  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 207
Target Start/End: Original strand, 16769946 - 16770050
Alignment:
Q  103 gttgatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacagatcaccttgtcggaggccatgagaaggcttgaaaggcggcaac 202  Q
    |||||| || ||||| || |||||||| || | |||||| |||||||| || |   ||||||||||||| || ||||||| ||| |||||| |||||||     
T  16769946 gttgatggctgctgagagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaat 16770045  T
Q  203 ttgtt 207  Q
    |||||    
T  16770046 ttgtt 16770050  T

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