View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_183 (Length: 269)
Name: NF6866A_low_183
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_183 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 2 - 264
Target Start/End: Original strand, 36506376 - 36506637
Alignment:
| Q |
2 |
agaggccgaacaactaacaacaacaaaccctctacgctaactagcaaaatctgagaagctaagaacaaaaaaccccaaaaaccaaacagcagcacactta |
101 |
Q |
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||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36506376 |
agaggccaaacaactaacaacaacaacccctctacgccaactagcaaaatctgagaagctaagaacaaaaaacagcaaaaaccaaacagcagcacactta |
36506475 |
T |
|
| Q |
102 |
tggacacacacttcaatttgataacaagaaatggaaacatgcaagagaaaaatggaattaattgacattttacctgcttgtactcaaataattccttgtc |
201 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36506476 |
tggacacacacttcaatt-gataacaagaaatggaaacatgcaagagaaaaatggaattaattgatattttacctgcttgtactcaaataattccttgtc |
36506574 |
T |
|
| Q |
202 |
tgagtagtagaattctctttttgtggagtaggaattgtctttcaacaaatctatgatcaaggt |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36506575 |
tgagtagtagaattctctttttgtggagtaggaattgtctttcaacaaatatatgatcaaggt |
36506637 |
T |
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