View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_187 (Length: 266)
Name: NF6866A_low_187
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_187 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 38893216 - 38892961
Alignment:
| Q |
11 |
cacagaaagcaaccccattaaccgcagctgatacattgggtggcaatgtaccgggcttcccggcaccatcaacatggtaatatatgcgtcccagcaactt |
110 |
Q |
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| T |
38893216 |
cacagaaagcaaccccattaaccgcagctgatacattgggtggcaatgtaccgggcttcccggcaccatcaacatggtaatatatgcgtcccagcaactt |
38893117 |
T |
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| Q |
111 |
ggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgattgctgtgaagtgataccattgcgttttcgccaca |
210 |
Q |
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| T |
38893116 |
ggtaacaagggatatgcagaacagatcataggcatcagtaaagaatcccattccagcaatgatgattgctgtgaagtgataccattgcgttttcgccaca |
38893017 |
T |
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| Q |
211 |
tcaagtgcatttagcacctgaatttgctcctttgccattacttttcaatctaaagt |
266 |
Q |
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| T |
38893016 |
tcaagtgcatttagcacctgaatttgctcctttgccattacttttcaatctaaagt |
38892961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 38884024 - 38883777
Alignment:
| Q |
11 |
cacagaaagcaaccccattaaccgcagctgatacattgggtggcaatgtaccgggcttcccggcaccatcaacatggtaatatatgcgtcccagcaactt |
110 |
Q |
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| T |
38884024 |
cacagaaagctacaccattcacagcagctgatacattgggaggcaatgtaccgggcttcgcagcaccatcaacgtggtagtatatgcgaccgagcaactt |
38883925 |
T |
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| Q |
111 |
ggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgattgctgtgaagtgataccattgcgttttcgccaca |
210 |
Q |
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| T |
38883924 |
tgtaacaagggatacacagaacagatcataggcatctgtaaagaatcccataccagctatgatgattgcagtgaaatggtaccattgtgttttagccaca |
38883825 |
T |
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| Q |
211 |
tcaagtgcatttagcacctgaatttgctcctttgccattacttttcaa |
258 |
Q |
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| T |
38883824 |
tcaagcgcatttagcacctgaatttgatccttagccatgactattcaa |
38883777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 76 - 230
Target Start/End: Original strand, 30620927 - 30621081
Alignment:
| Q |
76 |
ccatcaacatggtaatatatgcgtcccagcaacttggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatga |
175 |
Q |
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| T |
30620927 |
ccatcgacatggtagtaaatgcgaccgagtagctttgtgacaagggatatgcagaatagatcgtatgcatcggtgaagaagcccattccagctatgacaa |
30621026 |
T |
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| Q |
176 |
ttgctgtgaagtgataccattgcgttttcgccacatcaagtgcatttagcacctg |
230 |
Q |
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| T |
30621027 |
ttgctgtgaaatggtaccattgtgttttcgctacatctagtgcatttagcacctg |
30621081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 16223312 - 16223190
Alignment:
| Q |
105 |
caacttggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgattgctgtgaagtgataccattgcgttttc |
204 |
Q |
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| T |
16223312 |
caactttgtgacaagggaaatgcagaaaagatcatatgcatcagtgaagaatcccattccagcaatcacaattgtagtgaagtgatacaattgtgtcttg |
16223213 |
T |
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| Q |
205 |
gccacatcaagtgcatttagcac |
227 |
Q |
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| T |
16223212 |
gccacatcaagtgcatttagcac |
16223190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 229
Target Start/End: Complemental strand, 33115062 - 33114936
Alignment:
| Q |
103 |
agcaacttggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgattgctgtgaagtgataccattgcgttt |
202 |
Q |
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| T |
33115062 |
agcaatttggtaacaagggaaatgcagaagagatcataggaatcagtgaaaaaacccattccagcaatgacaattgcagtaaaatgataccactgtgtct |
33114963 |
T |
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| Q |
203 |
tcgccacatcaagtgcatttagcacct |
229 |
Q |
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| T |
33114962 |
tggctacatcaagtgcattaagcacct |
33114936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 16183922 - 16183800
Alignment:
| Q |
105 |
caacttggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgattgctgtgaagtgataccattgcgttttc |
204 |
Q |
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| T |
16183922 |
caactttgtgacaagggaaatgcagaaaagatcatatgcatcagtgaagaatcccattccagctatcacaattgtagtgaaatggtacaattgcgtcttt |
16183823 |
T |
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| Q |
205 |
gccacatcaagtgcatttagcac |
227 |
Q |
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| T |
16183822 |
gcgacatcgagtgcattaagcac |
16183800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 224
Target Start/End: Original strand, 16175440 - 16175559
Alignment:
| Q |
105 |
caacttggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgattgctgtgaagtgataccattgcgttttc |
204 |
Q |
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| T |
16175440 |
caactttgtaacaagagaaatgcagaaaagatcataagcatcagtgaagaaacccattccagctatcacaattgtagtgaaatggtacaattgtgtcttt |
16175539 |
T |
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| Q |
205 |
gccacatcaagtgcatttag |
224 |
Q |
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|||||||| ||||||||||| |
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| T |
16175540 |
gccacatctagtgcatttag |
16175559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 33109012 - 33108900
Alignment:
| Q |
115 |
acaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgattgctgtgaagtgataccattgcgttttcgccacatcaa |
214 |
Q |
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|||||||| ||||| || |||||||||||||| || || || ||||||||||| || | ||||||||||| || ||| ||| || ||||||||||| | |
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| T |
33109012 |
acaagggaaatgcaaaagagatcataggcatcagtgaaaaaacccattccagcaatcacaattgctgtgaaatggtacatttgtgtcttcgccacatcga |
33108913 |
T |
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| Q |
215 |
gtgcatttagcac |
227 |
Q |
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||||||| ||||| |
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| T |
33108912 |
gtgcattaagcac |
33108900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 167
Target Start/End: Original strand, 9700035 - 9700078
Alignment:
| Q |
124 |
atgcagaacagatcataggcatccgtaaagaatcccattccagc |
167 |
Q |
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| T |
9700035 |
atgcagaacagatcataggcatcagtgaagaatcccatgccagc |
9700078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 37316137 - 37316274
Alignment:
| Q |
87 |
gtaatatatgcgtcccagcaacttggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgattgctgtgaag |
186 |
Q |
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| T |
37316137 |
gtaatatattcttccaagtaacttggtaacatttggtatgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaa |
37316236 |
T |
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| Q |
187 |
tgataccattgcgttttcgccacatcaagtgcatttag |
224 |
Q |
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|| |||||||| ||||| || ||||||| ||| |||| |
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| T |
37316237 |
tggtaccattgtgttttggctgcatcaagggcagttag |
37316274 |
T |
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