View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_214 (Length: 251)
Name: NF6866A_low_214
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_214 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 25870167 - 25869927
Alignment:
| Q |
1 |
ccaaatagcctagaaataaggccaaagtaatgcttataattagtgggcatttctcaccttacaaattggttttgtgtggttgagttaagccataatttca |
100 |
Q |
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| T |
25870167 |
ccaaatagcctagaaataaggccaaagtaatgcttataattagtggacatt-ctcaccttacaaactagttttgtgtggttgagttaagccataatttca |
25870069 |
T |
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| Q |
101 |
aattctatgaatttgtaaatgtgaaatattacatattttcagagtccatgttatgcttgtcttcaatttattcttttttcttttcggtacaaaagagggc |
200 |
Q |
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| T |
25870068 |
aattctatgaatttgtaaatgtgaaatattacatattttcagagtccatgttatgcttgtcttcagtttattcttttttctttttggtacaaaagagggc |
25869969 |
T |
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| Q |
201 |
caaattccaaagaaaaaactacaaaattaaatggatattctt |
242 |
Q |
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| T |
25869968 |
caaattccaaagaaaaaactacaaaataaaatggacattctt |
25869927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 25853102 - 25853017
Alignment:
| Q |
3 |
aaatagcctagaaataaggccaaagtaatgcttataattagtgggcatttctcaccttacaaattggttttgtgtggttgagttaa |
88 |
Q |
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| T |
25853102 |
aaatagcctagaaataaggcctaagtaatgcttataattattaggcatttgtcaccttataaactagttttgtggggttgagttaa |
25853017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 25853005 - 25852927
Alignment:
| Q |
122 |
tgaaatattacatattttcagagtccatgttatgcttgtcttcaatttattcttttttcttttcggtacaaaagagggc |
200 |
Q |
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|||||||||||||||||| || |||||||||||||||| | ||| |||||||||| || |||| ||||||||||||||| |
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| T |
25853005 |
tgaaatattacatatttttagggtccatgttatgcttgccatcagtttattctttattatttttggtacaaaagagggc |
25852927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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