View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_215 (Length: 251)
Name: NF6866A_low_215
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_215 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 40688443 - 40688208
Alignment:
| Q |
1 |
aattagaggcattcataaaggatctaacatattgaatgatgggagcataaggatgaatgtatataggattattccttacactcagattctatcagattgg |
100 |
Q |
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| T |
40688443 |
aattagaggcattcataaaggatctaacatattgaatgatgggagcataaggatgagtgtatataggattattccttacactcagattctatcagattgg |
40688344 |
T |
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| Q |
101 |
agatagtcttgcagttagattcacaaatggcttccttaaaaccgttactccaatatcccaagtgatcaaaaccaaactatgagcaaaattgcatgtaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40688343 |
agatagtcttgcagttagattcacaaatggcttccttaaaaccgttactccaatatcccaagtgatcagaaccaaactatgagcaaaattgcatgtaatt |
40688244 |
T |
|
| Q |
201 |
ccacatcgatattataagtatagtcaataacctaat |
236 |
Q |
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| |||||||||||||||||||||||||||||||||| |
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| T |
40688243 |
caacatcgatattataagtatagtcaataacctaat |
40688208 |
T |
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