View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6866A_low_217 (Length: 250)
Name: NF6866A_low_217
Description: NF6866A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6866A_low_217 |
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Alignment Details
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 244
Target Start/End: Complemental strand, 38059565 - 38059472
Alignment:
| Q |
153 |
gcatattgcattattctattatgaccttatctgctccaaggatttctctgtgtcccttgaacacat--aagaaggtatactctgttcatctctg |
244 |
Q |
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| T |
38059565 |
gcatattgcattattctattatgaccttatctgctacaaggatttctttatgtcccttgaacacatgagagaaggtatactctgttcatttctg |
38059472 |
T |
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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 38060889 - 38060982
Alignment:
| Q |
153 |
gcatattgcattattctattatgaccttatctgctccaaggatttct--ctgtgtcccttgaacacataagaaggtatactctgttcatctctg |
244 |
Q |
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| T |
38060889 |
gcatattacattactctattatgaacttagatgcttcaaggaattctatctgtgtcccttggacaaatgtgaaggtatactttgttcatttctg |
38060982 |
T |
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